Array 1 2059816-2061469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027009.1 Akkermansia muciniphila strain EB-AMDK-34 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2059816 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 2059881 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 2059946 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 2060010 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 2060075 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 2060140 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 2060205 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 2060270 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 2060335 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2060400 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 2060464 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2060529 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2060594 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2060659 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2060724 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2060789 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2060854 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2060919 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2060984 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2061049 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2061114 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2061179 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2061244 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2061309 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2061374 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2061439 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2553229-2549647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027009.1 Akkermansia muciniphila strain EB-AMDK-34 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2553228 33 100.0 33 ................................. GATTGCGTAGGGCCGCATGTACGGCTTAACATA 2553162 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 2553095 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 2553028 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 2552961 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2552894 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552827 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 2552760 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 2552694 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 2552627 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 2552560 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 2552493 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 2552425 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552358 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 2552291 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 2552223 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 2552158 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 2552090 33 100.0 34 ................................. AGTAGCAGATTGTGAGAGTTTCCGGCTTGTGATA 2552023 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2551956 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2551890 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2551824 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2551757 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2551690 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2551623 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2551556 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2551489 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2551423 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 2551356 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 2551289 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 2551222 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 2551155 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 2551088 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 2551021 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 2550954 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 2550887 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 2550820 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 2550753 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 2550685 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 2550619 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 2550552 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 2550484 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 2550417 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 2550350 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 2550283 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2550215 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2550148 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2550082 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2550015 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2549948 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2549881 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2549815 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2549748 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2549725] 2549679 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 54 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //