Array 1 436916-437922 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBW01000002.1 Salmonella enterica subsp. enterica serovar Worthington strain 97-0196 NODE_2_length_612385_cov_3.51247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 436916 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 436977 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 437038 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 437099 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 437161 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 437223 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 437284 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 437345 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 437406 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 437467 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 437528 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 437589 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 437651 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 437712 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 437773 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 437834 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 437895 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446657-448397 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBW01000002.1 Salmonella enterica subsp. enterica serovar Worthington strain 97-0196 NODE_2_length_612385_cov_3.51247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446657 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 446718 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 446779 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 446840 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 446901 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 446962 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 447023 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 447084 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 447145 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 447206 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 447267 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 447329 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 447390 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 447451 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 447513 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 447574 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 447635 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 447696 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 447757 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 447818 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 447879 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 447940 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 448001 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 448062 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 448123 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 448184 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 448245 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 448307 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 448368 29 96.6 0 A............................ | A [448394] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //