Array 1 102912-103719 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIT01000008.1 Pseudomonas aeruginosa strain KCJ3K95 NODE_8_length_104235_cov_5.803915, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102912 28 100.0 32 ............................ TTCCGATGTGCATGTTTCAGCGAGGCCCATCC 102972 28 100.0 32 ............................ TAAGGGATACAACCGAGTCCCGAACATCAACC 103032 28 100.0 32 ............................ AGCAAAGCCACGTGTACGAATGAAGTTCTCGC 103092 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 103152 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 103212 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 103272 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 103332 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 103392 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 103452 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 103512 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 103572 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 103632 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 103692 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 365-1353 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIT01000108.1 Pseudomonas aeruginosa strain KCJ3K95 NODE_108_length_18921_cov_5.269128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 365 28 100.0 32 ............................ TCGATGGGAGCCGGGAAGCGAGCGGCATCGCT 425 28 100.0 33 ............................ CTGGCCGGGCGACTTGACGCCGATGATGGCGCC 486 28 100.0 32 ............................ CTAGCCATGGCAAAGGTGCTGGGCGTAACCAC 546 28 100.0 32 ............................ TGCGGCCTCGTATACCTGCTGTTGCGTCAAGC 606 28 100.0 32 ............................ TGTCGAAGCTGATCGACACCAGCGGTCGCTTC 666 28 100.0 32 ............................ TTGAAGTAACGGAGCCGCGCCCCCTTGTCGGC 726 28 100.0 32 ............................ AGGGAGAACAGTTGTTTCAGTTGTTTCATGGA 786 28 100.0 32 ............................ ATCTCCTTCTGCCGGTTGTGATCTTTATTTCA 846 28 100.0 32 ............................ TTCACGATCCGTAAGAAGGCCTCGAAGATTTT 906 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 966 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 1026 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 1086 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 1146 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 1206 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 1266 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGTCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11038-9868 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIT01000108.1 Pseudomonas aeruginosa strain KCJ3K95 NODE_108_length_18921_cov_5.269128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11037 28 100.0 32 ............................ GCGCCGGCATGAGATCGCCGGCCTCCGCTATT 10977 28 100.0 32 ............................ TACAACGTTCCCTGCAAGCGAGGCGGAAAGGT 10917 28 100.0 33 ............................ ATCCTGGGTGGACAGCTGCAAGACTTGGTGATT 10856 28 100.0 32 ............................ AAACGGGTTGTTCTTCACGAACGCGCAACTAT 10796 28 100.0 32 ............................ CTAGGGCAATCTGTATATTCAGCGGTTTCCTA 10736 28 100.0 32 ............................ TAGCAGTGTCGAAGGCATCGGCCCGGCTGCTG 10676 28 100.0 32 ............................ GACCGGCGCGCTGTCGAGCCCATCGCCGGCGA 10616 28 100.0 32 ............................ TTGGCGAAGAACAGGCAGTCCACAGGATCGAT 10556 28 100.0 33 ............................ CAGCGCATGCCCGCAGCCCCGCGGGCGTTTTAT 10495 28 100.0 32 ............................ GCGAATGGAACGCCCCCACCCTGGACGAGCAG 10435 28 100.0 32 ............................ TCGCGGAACAGCGGTTCGGCTTCCAGCGGCGT 10375 28 100.0 32 ............................ AGCCATTCGATGTGACCCGTAACTCGCTGGTC 10315 28 100.0 32 ............................ TCAGGCGAGTCGATGCCGGCATCGAGCAGTTC 10255 28 100.0 32 ............................ CACTCCAAGCGTGATCATGGCGGCGTTTCGCA 10195 28 96.4 32 ...............A............ GATCCGCGTGTCTCGGTGCTGCTGTTCAACAC 10135 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 10075 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10015 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 9955 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9895 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //