Array 1 1113000-1113826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047415.1 Lactobacillus crispatus strain 1D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1113000 36 100.0 30 .................................... TATCACAGTAAAGAATACGTCCTTGAGCAG 1113066 36 100.0 30 .................................... ACCGAAAACAAATACAACCTCTATTCTCCT 1113132 36 100.0 30 .................................... TTACAAGCTGATCCTTCAGCATACCATTTT 1113198 36 100.0 30 .................................... AGTTTGGGGAGGCTTGAGTTCTGACAAGCT 1113264 36 100.0 30 .................................... TTAGAAAAGCTATTCAACGATAAGAATTTG 1113330 36 100.0 30 .................................... TTAGAAAAGCTATTCAACGATAAGAATTTG 1113396 36 100.0 30 .................................... CACAAAACTGGGTACAGTGGTTAGGCTTTC 1113462 36 100.0 30 .................................... ATGCAGATGATAGAAGGCACCAAGAAGATT 1113528 36 100.0 30 .................................... AACTTGCTTTAACGCCATAACGTGCCATTG 1113594 36 100.0 30 .................................... GCTTAGTATCGATATTGTTTCTAAGCAAGC 1113660 36 100.0 30 .................................... TGTACAATCTCCAATAGAGCTGTCCCCATG 1113726 36 100.0 30 .................................... GAACCTTGAGCAAGTGAATTCTGATCAGCA 1113792 35 83.3 0 .....................-...G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : AATGACAATATTATGGCAAAGTATATGAATGTCATTATTAAGAACTTTATTTCTAACTTGGATGAGGTAAACAGAAATAGAATTTTAAAATCTTTTTATTCATTAGAAACAGTATTGAATGATTCTTTGCTTTTGGAAGATTTACCTTTAGAAATTGATTTTAGCGAAGATATTAAAAAGCTGTTGAAAATGGTTAACATTCATTTAGATGCTCAATTAATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGCAATATGGGGTAGCAGTCAAGGATGCCCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCG # Right flank : CAGTAATCTGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTTGACATACTTGATCTTAGTATCTATCATTACTTAGCGTAATCATCAATGCCCAAGTGCTCCAAAATAAGTGCAGCAGTTTCTTCAATGGAGCGGTGAGCAACGTTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTAATTTCATTCAATACAGATGGATCGTTGGTTAAACCAATAATCTTCTTAGGATCAATCTCGTAAATTTCCTTTGGAATATGAGTTTCTGGAACAAGTGGTAAGTTAGCAACCTTCAAGTTCTTGTTAGCTAAGAACAATGAAAGTGGAGTCTTAGAAGTTCTAGATACACCAAGTAAAACTACGTCAGCTTCCAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1125538-1125750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047415.1 Lactobacillus crispatus strain 1D chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1125538 29 100.0 32 ............................. GTGGTGAGGTGTTCCAAGTCAATGATTCAGGT 1125599 29 100.0 32 ............................. TATCTTTGAGCACATTGCCCATGATGAAGGTA 1125660 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 1125721 29 86.2 0 .............A...........AA.A | C [1125743] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGACAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAAAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCTTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //