Array 1 4628-4772 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PJNM01000096.1 Streptococcus pneumoniae strain NP53 NP281a_contig_96__1..4789__consensus, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence          	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=========================	===================================	==================
      4628	    25	 100.0	    35	.........................	ACTTTAGCCCAACCTGTTGCCATAGCACCATTAGC	
      4688	    25	  96.0	    35	...T.....................	TATTGGAGCCAACCTGTCGCCATAGCGCCATTGCT	
      4748	    25	  96.0	     0	..................G......	|                                  	
==========	======	======	======	=========================	===================================	==================
         3	    25	  97.3	    36	GTTGAGGTAGTACCATGAACCATTG	                                   	       

# Left flank :   GGTTAGAGAAGACAAGGAAGAGCTTAAAAATTGTTTTTTAAAACTTATAGTCAATATACAGATTTGTGAATGATGTGAGTATACCTTCTTCTTATCTTCATTCAAATAACTATAATAAATAAAACAACCCATTTTCTCTAATCTATTTTCCAAGTTAGAGAAAAGGAGTCGTTTTTTTAATGACATTTCCTGAAATCATAAGACAGGTACCTAAAGAATACGAACATAAATCTATTCAATCGAACCTTATCTTTGTTTCAAAATTAAAATGTCAAATGTTCTTAACATGATTTAATTTAATCGGCTTAAACCCATTCACCGTTTTCATTGACAGTATATCCGTCTACAGTTGTGTTGACTGCAAGGGCACCTAAGCCATTGACATAGTACCATTTATCTGATACTTTGAACCATTGGTTTGCTTTCATAGCACCTGATGCTTCAAGATAGTACCAGGTATCTCCATCTTTCACCCAACCTGTTGCCATTGAACCGTTAGC
# Right flank :  TATTCTAGCCAACCTGT

# Questionable array : NO	 Score: 2.53
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGAGGTAGTACCATGAACCATTG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:56.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-1.00,-0.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [55.0-16.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [1.05,0   Confidence: HIGH] 

# Array family : NA
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