Array 1 117010-116693 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGY01000022.1 Bifidobacterium thermophilum strain 1542B Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 117009 25 100.0 48 ......................... TAGTGGAGGTGCGGCTGACCTGGGAGTGGTGATTTTGTTGGGTGGAGG 116936 25 96.0 48 ......................G.. TAGTGACCGGTTGGTTGGTCGGGGAGGGGTGATGTGGCGGGGTTTGCC 116863 25 100.0 49 ......................... CGATGACTTGTCTGGATGGCTTGGAGTGGTTGGTGGGTGGTGCGGAGCG 116789 24 88.0 48 ...-.....C............G.. TGGTGACGACGTGAGTGGTTTGGGAATGCTGGATTGGTTGGGTGGAGG 116717 25 96.0 0 ..T...................... | ========== ====== ====== ====== ========================= ================================================= ================== 5 25 96.0 48 GTGGTTGTGTGAGGATTGGCTCACA # Left flank : GGTTTCGCCGGTTTGGTTTGGCTGGTGGTTGGTCGGTGGCGTTACGGTCGGTTGGTTCGTGGTGTGGTTGGCTGGTCGGTGGCAGCGATATGGTCGGTTGCGGTCGGTTGGTTGGCGGAGTTGATGGAGTTTGATGAAGTTTGGTCGTTGCGACGTATTGACACCATGGTGGTGAATGAGAGTTCCGTATGGTTGCGTATGCGGTGACATACGCAACCAGATGGAAGGCGCAGGGGAACGATACAATCGCTTGGCGTCTGCAGGCTTGTGCATGCCCGGGCATACGCGGAGCCGCGGAATCGGCATATCAGGGCTCCCGGGCGCTTGCTTCTGTCGCACGGCGCATGTCCTGGCATACTCGCGGTCGGCAATCCCGGCCACATGACAAACCCGATTGCGTCCCCTGATGCCGACGACATTACGGAGTTCTCTGATGCCCTAGCGTCTTGTAGCCGCAACGTCCGTTGGGATGATAATCAATGCCTTTGGTTCTCTTTGCC # Right flank : GGGTGGAGGTGCGGGCGGCTTTGGAAACGACGGTTTGGCTTGGGGCATCTCTGCCGGGGCGGGAGTCTGGCGGCGCTGACTTCCACGGGACAGTCCTCGCCCGCTGCCGGCCATGGCCGTGATGAGGGTATGCGCTAGGATGGTGGCGTGCGATTTTCATCACGAGTAGACATCAGCGCCCCGAATGCCATTGCCCGGGCGGAGCAAGCCGCCAAAGAGGACGGCATCACGCTTGACAAACTCAACGATTCGAATCCGACCAAGTTCGCGCTCGCGCCGCAATCCTTGCCGACCGTCTACGCTGCGCAACCCCGCGGCCAATTCGAAGCCAGGCGGAAACTGGCCGGTTTCCTTGCAGACAGACGCCGCCGCGAGTCCACGTTGCCTGACGCGCAGCCGGTCGATGCGAATCGTCTGTATCTGCTCAGCTCAACCTCACAAGCGTATTCGTGGCTGATGAAACTGCTGTGCGACGCCGGCGACATCGTACTCGCCCCCAA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTTGTGTGAGGATTGGCTCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 95903-98799 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGY01000011.1 Bifidobacterium thermophilum strain 1542B Contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95903 29 100.0 32 ............................. GAAGGCAATACGATGGCGGCACCGATGTACCT 95964 29 100.0 32 ............................. GACATACTTGGAGCGAGTGCAGAAGGTCAATG 96025 29 100.0 32 ............................. CCAAGGCGCGGAATCCTCGGCGGAGCGCACCA 96086 29 100.0 32 ............................. TCCATCGTTTTGCGCTTTGCGCTACTTTAATA 96147 29 100.0 32 ............................. CGGCCCGGCAGGCCCGAAGGGCGCTGACGGTA 96208 29 100.0 32 ............................. CGTCACGAGAAAACGGCTGAAAACGTTGAAAA 96269 29 100.0 32 ............................. CGCCGCGCGAGACACTGGCCCCGGCCAAAAAT 96330 29 100.0 32 ............................. CGGCCGGTGGCCCTGCCGATGTCATTCGCGCC 96391 29 100.0 32 ............................. TAAAGAGGCGAACAATGACTATTAAATTCGCA 96452 29 100.0 32 ............................. GCTTACCATTGACACGCTCGTATTATCGTTGG 96513 29 100.0 32 ............................. TTTTCGCTAGCGTAGACAAAAGCATTTGCCGC 96574 29 100.0 32 ............................. GGGTACAGCACGTATTATTCGGACGGTGTGCA 96635 29 100.0 32 ............................. AGTCACGGACGGCACGGATAGCGTGAGCAACA 96696 29 100.0 32 ............................. AAGACGGCTATCAAGGCGGCTATCAAGGACGG 96757 29 100.0 32 ............................. TCGAACCAAGCGACCACGCCCGTGGCGTGTTC 96818 29 96.6 32 ............................T TCGAGGGTCAGCTTCGGTTCCGCGTTGAGGAG 96879 29 96.6 32 ............................T TCGTCGCGGCCAGATCGGATTTCGTCGTGGAA 96940 29 100.0 32 ............................. TGGTTCCCCACGTCAGGGTCGCTAGACAGCAC 97001 29 96.6 32 ............................T CTCTTTCGCTGATATTAAGACATCAGCGCATC 97062 29 100.0 32 ............................. TAACGTGACTGAGAAAGACAAGACACTCCACG 97123 29 100.0 32 ............................. TCAATGGACGTGTAGCGTTGCTGGATACAGTC 97184 29 100.0 32 ............................. GCGTGGTATGCGGCGCTCGGCGGCAAGAATGA 97245 29 100.0 32 ............................. AGATTCTAGTCGTTGACAGCTTGCCGAAGGAA 97306 29 100.0 32 ............................. CGCTACCGTCAGCGCCGCGTGGAATCGTAAAA 97367 29 96.6 32 ............................T GACAAAGGACGAATAATGTCACCCTTCCATGA 97428 29 100.0 32 ............................. TATCTCCCGGTATATGTGTGCTTCGTCGATAT 97489 29 100.0 32 ............................. AATACGATGCCGCCGTAAGCTTGTGTGGTCAA 97550 29 100.0 32 ............................. CCCCGAAGCCGAAGCCACGGGGGTTATCGCTA 97611 29 100.0 32 ............................. GGCTTGGTTGAAGCTCTCCCGCAGTTGATTCA 97672 29 100.0 32 ............................. AGTCTGAAAAAAAGCATCAACGGGAACATGCC 97733 29 100.0 32 ............................. GTGGCCGGAACCTGCGGTTCGTCGCCAAGCGT 97794 29 100.0 32 ............................. AGTTGCGGGTAGGTGTCCGACGTCGGGTCCTC 97855 29 96.6 32 ............................T CCCATGCTTGCCCCATACGGAATGGCGTAGGT 97916 29 100.0 32 ............................. GGAGGCGTGATGAAGTGCAGAATCTGCGGTTC 97977 29 100.0 32 ............................. GATATCGGCAGGGGACACGGACAGGACAGGCC 98038 29 100.0 32 ............................. GTGCTGATGCTGTCGTTCTTGGCGAAGATTGC 98099 29 100.0 32 ............................. GTGACGATGCCCGCTGTAAACACGGTGAGGCC 98160 29 100.0 32 ............................. CTTAAGCTTGGTCGCCTGAGTAGTCATGTTCA 98221 29 100.0 32 ............................. GCCTGTCATGGGGGGACGCGGTCGCCCTCTAC 98282 29 100.0 32 ............................. CAGCGAATACCAGTCGATGCTCTCCGGGCAGG 98343 29 96.6 32 ............................T CGTTCAAGGTCAAGGCTGGAGCCTGATTTTCT 98404 29 100.0 32 ............................. AATGTTGCCGCGAATGCGGCAACAGATACCGT 98465 29 100.0 32 ............................. TGGTTCCCCACGTCAGGGTCGCTAGACAGCAC 98526 29 100.0 32 ............................. GTGTAGCGTTCGCGCCATGGAGGACCGGGATA 98587 29 100.0 32 ............................. GTGTGGACGGCCAAGGACGCGGCCGCTAATCC 98648 29 100.0 33 ............................. GCCCCACCGTATGGAATGGTGGCTCGATGAGCA 98710 29 100.0 32 ............................. AGCAACATCGCATCAGACACGCAGTCTCCAAA 98771 29 89.7 0 ...........G...........A....T | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCACATGCGGGGATGATCCC # Left flank : CAGGCTATGTGCTGCTTGTCGGGGTCGCGGATACGGACGGGCAGAGGGAAATCGACTGGCTGGCGGGCAAAATCGCTAGACTGCGAGGGTTCGAGGATGCCGGCGGGCGCATGAATGAGTCGATTACGCAGCATAACGGCGAAATCCTTTCCATCTCGCAGTTCACGTTGTACGGCAACATCCGCAAAGGCAACAGGCCGAGCTTCATCGCAGCCGGCGCACCTGAACACGCCAAACGTGTGTGGCTCGCCTTCAACGAAGCGTTGCGGGCGCAAGGACTCACCGTCAAAGAAGGACGATTCGGCGCGCACATGCGGGTGTCGTTGGTCAACGACGGGCCGGTGACGCTCGTGGTGGACACGGCGGAGGTGCTGGGGGAGTAGGGGGCATATCGACCGGCATCGCGGGGCGAATAAATGTTGGGTCGATGATCAACGCAAAGTAAACGGAAATGATGAATGCTGCTATAGTAAATGGCGGGAGTTTGCGCTTTTCATAGT # Right flank : TTTGCGAGGTCCTGTAAAAGAAAAGCCGCCCGAAGCGTCTCAGGTTGAGGTGGGCGCGGGGAGTCGGGCTCGCCTGCACGGTTTTGCAGCCCGCCGTCTGACCGCTCAGCCAGCCCGCCGCAGATGTGATAGCATAGGACTAGTAGCCCGCTCTGGTAACACCTTCAAAGCGACCCAATATCGCTGGTGATACTGGCGCGGGTTACTTTATTCTCGTCAGAATCCCGTCAGAGTCAATGACATGGACTGTGCCTCTCTTGAAAGCTTGGGCATGGCGCAAACACTCAGCAAGTTCATCATCCGACATTCCCCTGTTGCGAGAGTTGTCGAAAACGACACGAACCGCATCGCGCTTCCTCGACGCATTCTTCATATGGCTATACACCATGTCCTTGCTCGAGCATGCGTGCAGCGATTTCAGCTCGGTGCCGTCAGCGAGGTCGGCAAGGCCTCTATCGACAAGCCCGCCATCATCACCTTTCACATACTCGTGGTCAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //