Array 1 6147-5879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJFH010000046.1 Pseudoalteromonas sp. SG41-5 NODE_46_length_38263_cov_4.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6146 28 100.0 32 ............................ GGTAAAGCTAAGGCAGAGCGTAGAGCTGAAAA 6086 28 100.0 32 ............................ TCCCACTGTCACTGAACCATACCCAGTGTTAG 6026 28 100.0 32 ............................ GTCACAGTAATCTATAGATATTAAACCCGACA 5966 28 100.0 32 ............................ ACGGACAACCAGTATCAGCCCTGCAGCTTCGA 5906 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGCACACAGAAAGTATGTTTGATTTTTGATCTAAAGCAAATAGTTCAGGCAGAAAGGGAAGTCTGTTTGTGAGCCTCTCAGTTAATTTAAGATTAGCAAACTCAAAGTGAATACCTTACATAGTTAAACTCACCTTCATGTAAGAATAGACCCCGCACCATGTTTACCTCAAAACAACGTACACATTTTTTCAAACAATGTAAATATGTACTTGGTGCTGCTGATAATCCTTATCTAGATTTGTTCAGCGGTTCAACAGAACAAGTGCATCGCAAATTCTTTGCGTTTAGTGATTTAAAAGATAAACCTATTGATGGTAAGTTTGATTCTTATGGATTAAGTAAAGTTGCCACGATACCTTGGTTTTAACCCTTTATTTTTTCTCTTTAAAATTTTCTATAAAAACAATGGGTTATAACATATCGTTTTTGATAAGGTAAAATAGTAATATTTAACCTAATGGCTTGTTGTAACTTATTTTTATGCTGATATTCTATA # Right flank : ACGAGGGACCGACAAAAATATCGGGAATATTTTGGAACTGCGAAGCAGACCTTTATGGCGAAGGGCAGGACGCCTAAAGTAAACGACATATCTAGTAAAGAGTGCAGCGCGAAGAAGTGAGGTCATGGCAGGTTTTTGTTCCCGACAAAATCTAAGTACCTAAATCCATTTAGGCAATGACCGATGTAACCAAGCTCCATGGATGGATTCAAACGCCGATGTTTTTTTTCGCGCCAGCAAGCTTAGCGCCTACGACACAGGCAGCTTAGGTGGCGAGGCAGTGAAACGAGTTTTTTGATCACTATTCGGCGCTAAAGCGCTCTTCTACAAGCCACACTACGGATGCTTACGGCGACGATATGCTTAACGTGCTAAGCACGAGCTACAAATTATTTCATGGTTTCTCATTTACCCTCACTGTCTGTTTTTTGTGCAACAAATCGTTAAGTTCTAGGAAAATGATTTGCAGAGCTGCATTTGTATGCGCTGAAGAACTGTTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9-2052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJFH010000127.1 Pseudoalteromonas sp. SG41-5 NODE_127_length_9840_cov_4.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 ............................. GTGCCGTAACTACTAGCATTGTACAAATTCAA 70 29 100.0 32 ............................. CTAACTTTTCCGTCCGCCGTTTTAATTTTTGC 131 29 100.0 32 ............................. CGTGGGTTATCTGTGTAATTTATCTTTTTAGT 192 29 100.0 32 ............................. AGATAGCATCAATTTGGAATGTGCAGCTATTA 253 29 100.0 32 ............................. TGACCATTCAGTAATAGGCAGGCAGGGTGACG 314 29 100.0 32 ............................. TTTGCAACAACAGCGGATGAGTTAGGTGTTAG 375 29 100.0 32 ............................. CGCGCATTGCACAAAACGTCGCACCTTGGCTT 436 29 100.0 33 ............................. CTTAGGCTCTGCACTATCAAAAGATTTATACGC 498 29 100.0 32 ............................. CACAGCGCCGAGGTGTGGCATGAGTATTTTAA 559 29 100.0 32 ............................. GTTAGGTGATATTATCTCGCAGCTATGGCGTT 620 29 100.0 33 ............................. CTTTTGCTGCAGCGGTCTTTTCACTAAACATGC 682 29 100.0 32 ............................. CAACCATCAATCAGTGACCGCATTATCTACAT 743 29 100.0 32 ............................. CCTGATTTATCAAAGTTCGTTGACACAACCGC 804 29 100.0 32 ............................. CAATCATTCATACTTTCGATGTATGCGATCAT 865 29 100.0 32 ............................. CCATTTAAATACATGGTGCGGATTATCGTAAA 926 29 100.0 32 ............................. ATATCGAGTTCATGTTGAGCATGAATACAGGA 987 29 100.0 32 ............................. GATACCTTTGTAGATATTAATGCTGTTGATGA 1048 29 100.0 32 ............................. GTAAACAAACCTTCTTTATCAGCCTCTTTTTG 1109 29 100.0 32 ............................. ACTATCAATTGAGTCTGCAAGACTGCCAACTT 1170 29 100.0 32 ............................. CTGATACATTTATACCATCAATTAATACAACA 1231 29 100.0 32 ............................. CAAAAAAACTAGCACAAACACTGACACCACCA 1292 29 100.0 32 ............................. ATGGAAACCGACATCACAAGCGGTGGTGAGAA 1353 29 100.0 32 ............................. AATAAAGAAAAATCAGCGGTTGTTAATGACTT 1414 29 100.0 32 ............................. CTAGCTGAATCGGTTTGAGCATCTTGAAATAT 1475 29 100.0 32 ............................. TATGCTGCCAGTGGGTTTGTGCATTTTGGCAA 1536 29 100.0 32 ............................. ACGTTGAGGGGCTTGATCCTATCACCGCCTAT 1597 29 100.0 32 ............................. TTAAATCATACTCTGATTTAGTTGCTGACTTA 1658 29 100.0 33 ............................. CCTTAGTTGCTTTTCGTTTAATATGCGATTAAC 1720 29 100.0 32 ............................. GTATTAAATTATGTTAAACACAGCACAGTATT 1781 29 100.0 32 ............................. AAGGATTCGCTCGATTTAACATGGAACCGAAC 1842 29 100.0 32 ............................. TCATCGTGCTTACTTGTGCCGCCCGCTTCTTT 1903 29 96.6 32 .............C............... CCCTGCGCTTGTTGCCCAAGCTCTAGCCCTTG 1964 29 96.6 32 .............C............... TAAACGAGTTTAACGCTAACTTGCCAGAGCCC 2025 28 89.7 0 .................-........TT. | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.5 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : AATACAGTG # Right flank : GGTGAATTTAACTGGCTAAGATTTCACTTGCTGAAGTGATCATTTTGCGTTGCGGGTGACATTTCGCGCTAAAGCACGGCCTACAGTACAGGACATTTGGAGTATTGTTGAATTTATAAAGGGAGGGGTTAAGCAACATGTAATACTTTGATTTGTCGCGAGGTAAACTCGCTGCTACGAATACATGGCTCTAATGCTCTTCATCAAAGACTTGAATTTGATTGCGGCCTGTTTTTTTTGCCACGTAAAGTGCGCTGTCGGCGGCGAGGATCATCATATCGGCGGTGGTGTATTTATCTGGTTTACAGCTGTAACATCCGATGCTGAGGGTGAGGTGGTCGGCTACGTTTGAATTTGGGTGCAGGATATTTAGTTGGCTTATTTGCTGCTGCAGTAATCTGGCAAATTTTAAGCAGTGGGGTTTATCAATGCTGGGTAACACAATTGCAAATTCTTCTCCGCCGTAGCGAGCTGCTAAATCACCTTGTCGCTTACATAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 513-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJFH010000153.1 Pseudoalteromonas sp. SG41-5 NODE_153_length_6019_cov_4.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 512 29 100.0 32 ............................. AATAAATGCAGCTAAGTGGGAGTCAATAGTGC 451 29 100.0 32 ............................. AAATTTATAGATCGTGTGTTCATTAATGAAAA 390 29 100.0 32 ............................. CGGCTGACAGCGTAGCTATTGAAGCAAAGCCA 329 29 100.0 32 ............................. TGATGTGCTCACCGACTTTGTTAACTTATACA 268 29 100.0 32 ............................. GCTGTTATATGAAATTAACCATTAAATACATA 207 29 96.6 32 .C........................... GTGCCGTAACCAATACCATTGTAAAAATTTAA 146 29 82.8 32 ........G..TA..T..T.......... GCAACGTTTCCGACCGTCGTATTGGTTTTTGC 85 29 86.2 0 ..T......T..T....T........... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 32 GTGTTCCCCGTACTCACGGGGCTGAACCG # Left flank : ATTAAGCGCTGGTGAGATCACGCCACCTAAACCATATGAAGATGCCCAACTGCCAGCACTACCAGAGCCTGAATCTATTGGCGATGACGGGCATCGCACTAATTAGGAGTGGATTATGAGTATGTGTGTTGTTGTAACTGAAGCTGTACCACCCAGATTAAGAGGGCGATTAGCTGTATGGTTACTAGAAATTCGCGCAGGTGTATACGTTGGTGATGTAGGTCGAAAGATTAGAGAAATGATTTGGTTTCAAGTCTCTGAGTTGGCAGAACAAGGAAATGTGGTTATGGCGTGGGCTACAAATACTGAATCGGGTTTTGATTTTATTACTTATGGTAAAAATGCACGGATGCCTATAGATTTAGAAGGATTAAGGCTGGTCAAGTTTACACCAGTAAACAACGAAACATTAAGCTAAAAATAACTGTTACGCTCTTTAAAAATTTGGTAGATTTGAACTAGCTGTTTTTATTTATAAAAAACAAGCATATACTATTAGA # Right flank : GCGTGCGTATGCTGGGGAAGTGAACGTTTTTGGGGGGTACCGGTACTGACGGGGGTG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACTCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //