Array 1 1566815-1567745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043438.2 Enterobacter sp. LU1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1566815 28 96.4 33 ............A............... ATGATTAGTCAGATTGAATGACAATGCCTTAAA 1566876 28 96.4 32 ............A............... GCAAACCCCAAATCAGTTTCGAGCACCCTGCC 1566936 28 96.4 32 ............A............... TGCAAGCTGTCGTAATGCGCCAGCGCTACGGG 1566996 28 96.4 32 ............A............... AGCGCATCAACCGACAATAGCCAGGTAACGGA 1567056 28 96.4 32 ............A............... CCCGCAAACCTCCGACAAAAACGCTTCAAGAT 1567116 28 100.0 32 ............................ TACTTTGACAACGTCGAAGACCAGGTCAGAAA 1567176 28 100.0 32 ............................ TGACGCAATGCCGACACACCCGCGTGGCACAG 1567236 28 100.0 33 ............................ TGGCGGCGAAGCGGCAGCAAAGGAACTTCTTAA 1567297 28 100.0 32 ............................ AGCAATCAGCAAGAAAAAATATTGGCATTGAT 1567357 28 100.0 32 ............................ TTCAAGCGCAAAGACCATTGCGCCCGTCTCGT 1567417 28 100.0 33 ............................ GGAAAAAGTAGCTGCCGCACAGCAAAAAGCCAC 1567478 28 100.0 32 ............................ TTCACCAGCTACGGACTACGTTGAGCGCCAGC 1567538 28 100.0 32 ............................ ATGGCGATACGGTTGTTAGCGTCTCGGGTGTT 1567598 28 100.0 32 ............................ ACATTAAGCCCGCTCAATATGAGGCGGAAATA 1567658 28 92.9 32 ............A........G...... ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC 1567718 28 78.6 0 ......C..............A..CTCC | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.1 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TTCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGAGTGATTTCCGGGTGGTTGAATTTGACGACGAGACGGAACGGCTGAAGGAAAAAGAGTGGCTTCTGGAGGATACCGAAACCAAATGCGATTACTGCCGGGCATTGAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCACCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGTAGTTCATATCATTAATTAAGTTTAGTCTCGTGCGTCGGGGAAGGGACTCCGGCGGGGTATGGCGAAACCCTTTTTTCGAGTAGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCCAAACATTCACTCCAACTATTTTAAAATCCACAATTATCACCACAATCCTCGTTGTATTTTTAATAAGCTCAATACTCATTCATCCGACAACCATATTCCCTCATATATATTATTCATAAAAATAATACATTAAATATGTCAGAGATTTTTTATCTCGACACTCCGATAATTATTATTCATTTGATACGCGTCACATTTGTCTTCATCTTATCTCCGCTAACATACCCCGCATTCAACACATTGAAATAAAAAGCACTTGCTATGCCAGCGAACAGCATTACCCCATCCGACTTAAAAACCATTCTTCATTCAAAACGTGCCAATATCTATTACCTGGAGAAATGTCGTATTCAGGTAAATGGTGGACGCGTTGAATATGTCACTCAGGAAGGTAAAGAGTCTTTTTACTGGAATATTCCCATCGCTAATACGACGGCGGTAATGTTGGGAATGGGAACATCCGTTACGCAAATGGCGATGCGGGAGTTCGCGCGAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1571432-1572240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043438.2 Enterobacter sp. LU1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1571432 28 100.0 32 ............................ ATTTTCCGGAAGGGGAATAAAATTCTTCTTTT 1571492 28 100.0 32 ............................ ATAAGCCTCCTGCTGGGGCTGGCGTTGCCGGT 1571552 28 100.0 33 ............................ GGTGATGTGAGACAGAAATGGGACACACAAAGC 1571613 28 100.0 32 ............................ GGTATATTCAGCCTCCCCCGTCACCACTTCAA 1571673 28 100.0 32 ............................ GTCACCAGATTCCGATGACCAGACGATAATCG 1571733 28 100.0 32 ............................ TGGCTCGCCAGCTCGATGGCCTCAAAAGCAAA 1571793 28 100.0 32 ............................ GATGAGCTCGGTTCTATTCCGTATTCGTCAAT 1571853 28 100.0 32 ............................ CCAATGAACAGCGCAAAGGGCCTGAGCACTGT 1571913 28 100.0 32 ............................ TCGACGAAAAGAGGGGTCTACGCGACCCCCAA 1571973 28 100.0 32 ............................ TTCGTCGTGCAGCTGGCGCATCTCGCTCTCAA 1572033 28 100.0 32 ............................ TGTACCGGCACCAGACCGCTGTTTAGCAGAAC 1572093 28 96.4 32 ..................T......... CTGCGCGCGAAGTTTCATTTAAGATGCAAATT 1572153 28 100.0 32 ............................ AAGTCGGCCTGTCCTCCTGCTCCGTAACGCCA 1572213 28 89.3 0 ..........TA.G.............. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGCGCCACACGTTCGCTCTCGTCGGGCGTCAGCGTCCGGCCCGTACTTTTGCGGCGGGCAACGTTACGCTCGTTGATTCCCGTGACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTACTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGGATGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGGGGGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGGGAATTGACCCTGATTTTTGCCCAGAATGTAATGTATTGATTTTTCGGTTAAATATCCTGGAGCGCAAAAAAGGGTTTGAGCAGGGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGGTATTATTTCA # Right flank : ATCATCGAGTGTAAGGCTGTGTGATTTTATTGTGCGCACCACCGTACAACCAACACAAAACCCGAAACAAAACCCAACCAATCGTTCAAATAATCGACTGTACTAACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //