Array 1 205237-199839 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARA01000002.1 Salmonella enterica subsp. enterica strain CFSAN058493 SRR6921451_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 205236 29 100.0 32 ............................. AGCGTTATCCTGTGGCTGTTTTCAAATATCCG 205175 29 96.6 32 ............................T GGCGCTCATGGATTTTAAACCCCTGAACAACC 205114 29 100.0 32 ............................. TTGAAGGTAAAATAAACGTAACGGTAGCCAAC 205053 29 100.0 32 ............................. CATCCTTAAACCAGCCGTTGGTTGCAAGGCTG 204992 29 100.0 32 ............................. GTATTTCTGAGGACGAGCAAGAGATTGTGAAA 204931 29 100.0 32 ............................. GTTAACCAGTACGTCTATTTCGATCGGAGGGT 204870 29 100.0 32 ............................. CGTGCTATCAAAAAAGAGCAGCGCCGGGAAGA 204809 29 100.0 32 ............................. CCTGTAGTAATAACTTACCTACTGAAAATTAA 204748 29 100.0 32 ............................. GCGCCGCTGTATTTGTCGTTGCGCTTCCCGTC 204687 29 100.0 32 ............................. AACGCACGCTCCGACATAAACCTTCAGATAGG 204626 29 100.0 32 ............................. AGCGTTATCCTGTGGCTGTTTTCAAATATCCG 204565 29 100.0 32 ............................. TATCCCCGCAGTACCCTGTGAAGTTAACCAGT 204504 29 100.0 32 ............................. ACCAGAATATCTTCGTTGCCCGCCACCAGACC 204443 29 100.0 32 ............................. GCACCAGATCGTCAAAGAACGTACACCAAAAC 204382 29 100.0 32 ............................. ACAGTCAGCTACAGGCACTGCTGAGGAGTGCG 204321 29 100.0 32 ............................. GAATATCAGATCCGCTTCTTTCTTCGTGCGTA 204260 29 100.0 32 ............................. ACGCGGTGGAAGAGAACTTCGCGCAGCAGGGC 204199 29 100.0 33 ............................. GATTGCGGCGCTTGATTACTTCGTGAAAAACGG 204137 29 100.0 32 ............................. ACCACACTACAGAAAGGCATTGCCGCATACGC 204076 29 100.0 32 ............................. GCCTGCGTGTCCATGATGGCGGCTTTAATGTT 204015 29 100.0 32 ............................. GTGGCCGCAGGCACTATCCGCCTCGGACGTGA 203954 29 100.0 32 ............................. GTAATGATGGCGGCGGGGATTTTATTTTCGGT 203893 29 100.0 32 ............................. TCCGGGAGGCTCTGACCGTGGGCGTGGGTGCC 203832 29 100.0 32 ............................. CGTGTCCACCTGTTCAGGGCGAACAAATAACA 203771 29 100.0 32 ............................. CTTTCCCCGTGGCTTGTTTCTGCTCTGGCGGT 203710 29 100.0 32 ............................. TAAATAGCGGTGAAGAGCCAAATTATATACCA 203649 29 100.0 32 ............................. CTGGCAGCCACCTGTGAAAAGTATATTCAGAT 203588 29 100.0 32 ............................. CCTCCCTGACCGGTAATACTGCCTTTAACCAG 203527 29 100.0 32 ............................. GCTTTCATATGAGCATCAGCAGCAACCTTGTT 203466 29 100.0 32 ............................. CGTAGCGTTGTAATCCGAAACCCATCATTATT 203405 29 100.0 32 ............................. CAGCCTGAGCCGCTGGGGTGGGACTGAAAATG 203344 29 100.0 32 ............................. GATCTTGTTTCGCTCAATAAGGCGGGAATCCT 203283 29 100.0 32 ............................. ACAGAGTGTGCAGAATTGATTTCTCCAGTTAA 203222 29 100.0 32 ............................. GTTCGATCGTTTACCAGATTGGTGGCATTGAG 203161 29 100.0 32 ............................. AATGCACGGCGTCGAATACTGCTGCGTCAATA 203100 29 100.0 32 ............................. ATGTGTCTGCGTTCGTCACTTTGTAGTACAAG 203039 29 100.0 32 ............................. CGATACGCACACTTTGCCCCAGACCATCTTGA 202978 29 100.0 32 ............................. ATTCACTTGGTTTTTGGTTGTTCGAATCACCT 202917 29 100.0 32 ............................. GCCACGCCGTAGCGCAGCCCTGTTGACCTGGT 202856 29 100.0 32 ............................. CTGAATCTGCCCTCAATGATGCCTACAAAGCC 202795 29 100.0 32 ............................. GACCGCTAAACTGGTATCAAATATCTGATGGA 202734 29 100.0 32 ............................. ACGGCCAGCCAGAATGCGATGACGTTCGCCGC 202673 29 100.0 32 ............................. CCAGCGTTGCTCAGTGCCTGTCGCAGTCCATC 202612 29 100.0 32 ............................. GAAATAACGTTGATTGTGCTGTCTGATTTGCA 202551 29 100.0 32 ............................. CATCATGACGCACCCCTTTTACGGCTTTCAGG 202490 29 100.0 32 ............................. GTGTGAGGCTCAGACATTAGCGCGATAAAAAA 202429 29 100.0 32 ............................. CATCCTTAAACCAGCCGTTGGTTGCAAGGCTG 202368 29 100.0 32 ............................. TGATAACGCTCTGGGCCATTTTTCATCTCCGA 202307 29 100.0 32 ............................. CGCTGTTTAACCGTCTTGACGGCCTTAAAGAC 202246 29 100.0 32 ............................. CTCACTTTCATCATTACTTAGCGCCGATATAG 202185 29 100.0 32 ............................. ATATCCCGTCCACCGGAGGTACACAGTGAACA 202124 29 100.0 32 ............................. GTGGGCGGTTGTGGTGCCACTTTCCAGCCACG 202063 29 100.0 32 ............................. AGTATAGCTGTTTTACTCTCATCAGCCAGGGT 202002 29 100.0 32 ............................. GTGAAGATGAGTCCTTTCCATGCGCCTTTCAG 201941 29 100.0 32 ............................. ACCGGACTTAGCGGGATTGCTGGCGTACTGAA 201880 29 100.0 32 ............................. GCAATATCGTTTAAACCAGGTGATGCCAATGT 201819 29 100.0 32 ............................. CTAAAAATTCAGCGAAGGATGCTTCAAACGAT 201758 29 100.0 32 ............................. GTAATACGCTGGTGGCTGTTCGTGATAACGGC 201697 29 100.0 32 ............................. TTAATCAGCGCCGGGTTGCTGTCGCACAACAC 201636 29 100.0 32 ............................. CCGATCTTCTGCCTGACAGTATCCGTAAACCC 201575 29 100.0 32 ............................. GGCGAGCGTCAGTACAACTATGTGGTGATGCC 201514 29 100.0 32 ............................. CTGGCGCAGGCCATTCAGTCAACCAGAAAAGA 201453 29 100.0 32 ............................. CCTGCTTTGATAACCCTCTCAGGCGGCGAGGG 201392 29 100.0 32 ............................. ATCGCCGTCAGTCACGAGAAGGTCGATATAGA 201331 29 100.0 32 ............................. AGCCCAATTACATACCAGTACCGGAGGTTGCC 201270 29 100.0 32 ............................. TGACTGAATCCACCAGGGCGAATGCGTTATGT 201209 29 100.0 32 ............................. GTATTCTGTGGAGGCGTCATTACCATTGTTGA 201148 29 100.0 32 ............................. TAGGCCACGTACGCAGTAGTTTTCGGATACCA 201087 29 100.0 32 ............................. CCTGAACGAGGGCCGGACATGGGAACTACTCA 201026 29 100.0 32 ............................. GGCCGAATACGTCACCACCATGACCACACTAC 200965 29 100.0 32 ............................. GGGGATACTTTCATCGTCATGCTCTCCTGCTT 200904 29 100.0 32 ............................. TGAAATCAAGTTCAGCGGCCACTTACTCACCT 200843 29 100.0 32 ............................. GTAAGCGGTTTGACCTGAGCAAGGGGATGTTT 200782 29 100.0 32 ............................. TTGTTACCTTTGGCGTAATTACCAGCAACTAC 200721 29 100.0 32 ............................. GGAATCCTACGACCTGGTGAAATACGACTACC 200660 29 100.0 32 ............................. CCGAGGAAACCAATATCGCCCACATGTGGCGG 200599 29 100.0 32 ............................. GGACCTTTTCAGTTTACTCCGCCTACGGCAAA 200538 29 100.0 32 ............................. GCATTGAGGGAAAAAACAAAAGCTCTCTATAG 200477 29 100.0 32 ............................. GCCTCGTAGATATTCCCGAACTGTACGCAGAA 200416 29 100.0 32 ............................. TCCACGATCTCGCAGTGGGAATCAGGCATGAC 200355 29 100.0 32 ............................. CCCGCGAGCATGTGCAGCCCGGCATTATCGAT 200294 29 100.0 32 ............................. TTGCCGATACGGTAAACCTGCTGTGCGCCGCT 200233 29 96.6 32 ............................A CGCAGTAATACCGTCTTTCTGGGGTTCTTCGC 200172 29 100.0 32 ............................. TGGTGGATGTTTACGTCACCCATAATCCGAAA 200111 29 100.0 32 ............................. CCAGGCCAGGCGGTATATCGAAGCGATGACAG 200050 29 100.0 32 ............................. TTTTCGCCGGTATCGGTGCGCATCATGCCGAT 199989 29 100.0 32 ............................. TTTGCGCTCGCTGGCGTCAACAGCTTCTACGC 199928 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 199867 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================= ================== 89 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAATCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCACCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //