Array 1 2761398-2761098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOG010000001.1 Akkermansia muciniphila strain Akk1683 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2761397 33 100.0 34 ................................. CCTTTTACGCTCAATCTCCCGCTGTGCGTCGGCA 2761330 33 100.0 34 ................................. CCACAAGGGAACACAATAATCTTTGAAGTGAACC 2761263 33 100.0 33 ................................. AGGGGGTGAATGGCGGCAAGTTGGAAACGGTGA 2761197 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 2761130 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 5 33 99.4 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GGCGGCCTTTTTGTTTTCCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGTATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAATTGAAACCTGGAAAACTCACCTTTGCTTGTGGGACGAGGAC # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2793840-2793543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOG010000001.1 Akkermansia muciniphila strain Akk1683 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2793839 31 100.0 40 ............................... ATTTCCATTTTAGCTGATCCGGTTCCTTTAATTTTATCCC 2793768 31 100.0 34 ............................... ATTTCCGGCAAAACGTATCTTGGCGTGCCGTGTT 2793703 31 100.0 34 ............................... AAGTAATTTAGTGCTGATGTAGAATTCCTTCCCG 2793638 31 100.0 34 ............................... TTTCTCTCTCAGGAGCTTTCCTCCCTTTGATGAA 2793573 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 5 31 100.0 36 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : TATTTGTGTAACGTGACGGCGAATATGGTGAAAATTGACAGAAAGATGGCGAATTCACCTTTGAACGCCACCCCGTTGCATCCCCATTGCAACCTGGTTGCCCCTCCCTTGAAAACGGCTTGAACTGGCCCCCCCTACTCCCCGATCACGTTCCTGGCGGCCAACTCGTCAAATACGCGGATGAACTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGTCCCTCCGGTCGTGATGCCGACCAGGGACGCTCAATGTGAAGAGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACTCCCAATGGGCAGCCGGTCCAGAACCGCCAGCATCCGGCGCAACGCGGCACCCGTGAACCCGTAGCACAGGCCGCACATGATCCGTCCGTCGCAGCAGCTGCC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //