Array 1 10115-10835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGS010000013.1 Bacteroides pyogenes strain DD22 JD35_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 10115 36 100.0 30 .................................... TAAGTTTTTTAGTTAACTTTTTCATGTTAG 10181 36 100.0 30 .................................... ATCCAGCTGATAGGCTATGGCACCGGTTTC 10247 36 100.0 30 .................................... AATCTTCATAAGTTGGTTCAAAATATTCCA 10313 36 100.0 30 .................................... GATAAGGCAAATAGGGCTGTTTTGGATTTA 10379 36 100.0 30 .................................... AGTAACAAACCTTAACCCGGGGCTTTACCC 10445 36 100.0 30 .................................... AGATAAAATAAAATGCCGCAAAAGCTATCG 10511 36 100.0 30 .................................... CCATCCTGCACGCATCAGTATACGCGTCTC 10577 36 100.0 30 .................................... TATCCTTACTTTGTATACTTATGTACCTCT 10643 36 100.0 30 .................................... TAAAGTATTCGCCTCTTATTTCTTCACATT 10709 36 88.9 55 ...............A....A............TG. TATCGCTGACGAGTGGATAGATAACGGATTCAAAATCACCTGTGTACTTGCCGCT 10800 36 80.6 0 .....A.......T...C.......A..C..G...T | ========== ====== ====== ====== ==================================== ======================================================= ================== 11 36 97.2 33 GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Left flank : CGTATCTAAGTTGATGCGTTATTGTTACGATGGGCGGGTAAAGGGGTTGATGCCTTATTTTGCCAACCATGAAGCAACACAAGAGCAAGTGGAGGTGGAATTGCGTCATTATGAAGATCATCGCAGACGTGTATTTGATTGGGTTTTTGCTTTGGAAAAATCCGTTTTGAAGAATGAAAAGCTGAGAAGGTTGTATGAAAAATCTCAGGAAGGATGTGAGCATCGCAGATGCATAGATGCGTTGAGAAAGGCAACACTCGTTTCGGAAGAAGAATATAAGTTTCTTGTCCATATTCGTAATAAGTCTGCTCATAATCAATTCCCAGACTTGGAATTTGGGAAACTGACCCCGAACGTTACATCTGGTTTTTGCGAATGTATATGGAGTAAATATAAAGCAATAATTTGTCGAATCATTCCTTTTATAGATCCCGAAAGAAGATTTTTTGGGAAACTTTTGGAGCAGAAATAATTAACCAGTAATAGGTTAGGAAAGTTTG # Right flank : TGTATATAGAACCTTCCAATGAGTTTCGGGTAGCTAAAAAATCGGGGAAAGGAAGATTTGTAGGCGAATAAAAGAACTCACTGACTGCATAAAGTATACATTACAGTCAGTGAATCTTAATTTTGAGAGAAGTAGAAAGATGTAGGAGAATAGAACTACTTACCCTATTTTTTGTTTATAGAATGATAACCATATCCGCCTAAACACCTGACGAAGAAAAGAGAAACACCGCTATTAATAGTCGCTGCAAACTTTATTCAGGTCGACGGTGAAACCATCGTTCAACGGCATGAATTTGCCTTTTCGTTTCAGAAATTCTATCAATTCGTCGATATTCATGTTTTCGGCGGAGCAGGTGTAAAAATGCCGGGAAATGCTGAACCTCTTGATAATGGCTTCTTTCAGGCTGGCTTCCCGCCATAAACGGTAACAAATGTTACATTCATCGCCCGGATAATGAGATAATAGAAAGCGGTTTAGAAGATTTACGTAAATTTTGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATGCCACTGGTTTGAGTGGTATAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 41583-43352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGS010000030.1 Bacteroides pyogenes strain DD22 JD35_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41583 29 100.0 34 ............................. TCGCAAGGTCGAGGATAGCCTGTCGTTTTTGCTG 41646 29 100.0 38 ............................. TCCCCTGATGTTGGCTTGCTCTACAAAATAGTAGTAGA 41713 29 100.0 36 ............................. AAAAATAAACAATGGAATTATTGAGGCTAAGAAAGG 41778 29 100.0 35 ............................. ATGTTTCATTACGATAGAACTTTTTCATCGTTATT 41842 29 100.0 34 ............................. AACTCACCCGGAAACTTCTGCGGGCGCTCGGGCC 41905 29 100.0 36 ............................. GGAGATAGACACAGCGAGTGGAATTGCATCATTTTC 41970 29 100.0 35 ............................. TTGTTAACATTGTCGATTAAGAGTCTATCGCTATT 42034 29 100.0 35 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAAG 42098 29 100.0 36 ............................. TGAGTTGGTTTCTGATACTCCGTATAAATAGGCAAT 42163 29 100.0 37 ............................. TTAGCTTGTTAATTGCATTGCGGAGCGACTCTACCTG 42229 29 100.0 36 ............................. CCCTGAACTTCTCCGCTTCCGCGTTAGCTTCGTCCT 42294 29 100.0 36 ............................. AACGCAAGGAAAATCAAAGGCTTTTTTATACTCTTT 42359 29 100.0 34 ............................. AGAAATCGGCATAGGCGAGAAGTTCTATATATTC 42422 29 100.0 35 ............................. GAACATCCTGTAAGGCCTTATAGTATACACCATTA 42486 29 100.0 34 ............................. AACAACCAACTGGGTTAAAAACAACCCAAACAAC 42549 29 100.0 38 ............................. AGATGAGAGAAAGCAGAGTTCCAAAACAACTCCTCATA 42616 29 100.0 33 ............................. CAGCATTGGATGCGAATTCGATTATTCTACCTT 42678 29 100.0 36 ............................. GAGAGAAGTTATATGAGTTACTTGATGATAGCGAAG 42743 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 42806 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 42871 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 42935 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 43001 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 43066 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 43130 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 43194 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 43259 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 43324 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTAAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : AAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 2372-1556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGS010000070.1 Bacteroides pyogenes strain DD22 JD35_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2371 47 100.0 30 ............................................... GCATATCAAAAATGCCGCTAATGGCAAGAC 2294 47 100.0 30 ............................................... CTTTCGCAACCTACTCTAATGCGTACCTGC 2217 47 100.0 30 ............................................... AAGCATACATTGGTATATTCCATAATCATA 2140 47 100.0 29 ............................................... AGCAACTAAAATTCTATCTAAAATAAAAT 2064 47 100.0 30 ............................................... CGTTGCTTCGACAGCCGTACCTTTCACCTG 1987 47 100.0 30 ............................................... TGAGTTGAGAATGTCGGATAGGGAGACGAG 1910 47 100.0 29 ............................................... TAAGATTGATATGGCTTCTTCTGTAGGAT 1834 47 100.0 29 ............................................... TGTTGGTAACAGATGTTACTTTAAATGTA 1758 47 100.0 30 ............................................... AGGCTTTTTCCGCCTTTTTCTCGCCCTCCT 1681 47 100.0 30 ............................................... CCAGGCGGCTGACACGTTGCATCAGGCTCA 1604 47 80.9 0 ..............C...............C.GCC.GG...T....A | GT [1563] ========== ====== ====== ====== =============================================== ============================== ================== 11 47 98.3 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CATCGTTATATAAATGTTTTTCTGGAGAACTGCGTCGTATAAGCTATCCGGAGCGTTGATGGATCGTTTTAGTGAATATCGGGTTATGTGGGTTCTTGTTCTTTTTGATCTGCCGACGGAAACTAAGAAAGACAAAAAGGCATATGCAGATTTTAGAAAGAATTTGCAGAAAGACGGTTTTACTATGTTTCAATTCTCAATTTATATACGGCATTGTGCCAGTAGCGAGAACGCATCTGTACATATAAAAAGAGTTAAATCTTTCTTGCCTGAATATGGACAGGTTGGGATTATGTGTATAACAGATAAGCAGTTTGGAGACATTGAACTTTTTTATGGAAAGAAAATTCAAACCACTAATGCACCAGGTCAACAATTAGAATTATTTTAAAACAAAAAATCCCGTACTTACACGGGATTTTTTATTGTTAATGAGTACGGTTTTTCTTATTCTAATAGTCCTATTAATCCGTTGATTATTAGTTGTCTACTCTGATTCT # Right flank : AAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGGGAGCGTTTCTTCCAGAACTCGGGCGTCATTTCTGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCTGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //