Array 1 1701724-1701146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068827.1 Escherichia coli strain RIVM_C030371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1701723 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 1701662 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 1701601 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 1701540 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 1701479 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 1701418 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 1701357 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 1701296 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 1701235 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 1701174 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1729866-1728861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068827.1 Escherichia coli strain RIVM_C030371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1729865 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 1729804 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 1729743 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 1729682 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 1729621 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 1729560 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 1729499 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 1729438 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 1729377 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 1729316 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 1729255 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 1729194 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 1729133 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 1729072 29 96.6 32 A............................ ACCGTTGCTACACATATGATCAGGCATGTGCC 1729011 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 1728950 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 1728889 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //