Array 1 92468-90079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBJ010000018.1 Salmonella enterica isolate 4165_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92467 29 100.0 32 ............................. TATCTACACTGTTTGCGATTGTGAACGATGGG 92406 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTTGCTGAGGGCGAGGA 92345 29 100.0 32 ............................. ATCCGCGCCCGGCTTAAGGCGGCGGGCGTGAT 92284 29 100.0 32 ............................. GGGATCCTGCCGTTGCTGGGTATTCAGTTGCA 92223 29 100.0 32 ............................. ATCGTTGTCGTTCGCGTTGCTGAGGGGAGTAA 92162 29 100.0 32 ............................. TGAGTTGTGCTTCATACGCTCTTTTTGCTCTG 92101 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 92040 29 100.0 32 ............................. CCACTGGCAGCAATCCTTAACGCTGCTAAACG 91979 29 100.0 32 ............................. CCCGTGGTGATACCTGCGGCCATCGCGCCAAA 91918 29 100.0 32 ............................. GTACACTATATGATACTTAAATCAAGGGTGAT 91857 29 100.0 32 ............................. GACGCCCACAGCCAGGAATAGACCTCTTTCGC 91796 29 100.0 32 ............................. AACGTACAAGAAGCTCTCAACGTGTTCGGCCT 91735 29 100.0 32 ............................. GCGGCAACTCAACAGGTCTTCAAATTTGACCC 91674 29 100.0 32 ............................. TTCCTGTCCGATCTGAGCGTGACCGGCGAGGA 91613 29 100.0 33 ............................. GCGCAGGAAGCCGCGGCGTTTGAATATGAATGC 91551 29 100.0 32 ............................. GGGCGTTTAATCTTATCTCGCCTATTGGTTTA 91490 29 100.0 32 ............................. CTTGATAACGATCGCTGGGATGATATTGCAAC 91429 29 100.0 32 ............................. TCCACGTCGCCCAGCATCAGGTTCGCCGCTTC 91368 29 100.0 32 ............................. TGGCGGCGTGACATCGTCACAACATCTGGCCG 91307 29 100.0 32 ............................. CGTAATAACTCCCCCGCCCTGGTAAATCCGGG 91246 29 100.0 32 ............................. GCGGGTTAAACCCCGCCTGATTATCGAGATTA 91185 29 100.0 32 ............................. GCAGGCCGGGAACACGAAGACGACACCACATC 91124 29 100.0 32 ............................. GGTGGCAGCCCTTAATTACCGCGTTATCTCAA 91063 29 100.0 32 ............................. CAGCCGTCACAGGACGACTTGCGCACCTGGCT 91002 29 100.0 32 ............................. TTGAGTTCCGGGATTTCAATATCAGCATCTTT 90941 29 100.0 32 ............................. GTGATCGGGTTGCCGCTGGCATCCACTATTTT 90880 29 100.0 32 ............................. TCGCAGATCCCAAAAAAGAGACCGCGAGCAGA 90819 29 100.0 32 ............................. TTAGCGGGCGCACCATGAGGGCGCGGGGTTGG 90758 29 100.0 32 ............................. GCGGCTCTGTATTGGGCGATGGCTCCGGTGGT 90697 29 100.0 32 ............................. AAACAACCACAGTGCAGGAGAGCATTAATAGC 90636 29 100.0 32 ............................. AGAAAATGGAGCGCCTGCAATCAACGTTTACC 90575 29 75.9 9 ..............CTG.CA.......AC CGTGGAGTA A [90551] Deletion [90538] 90536 29 100.0 32 ............................. CAGCAACTCCTGCGCTGTGCGGTCATCGTTAT 90475 29 100.0 32 ............................. CACTGGCCGACCTGCACCCCAATGCCGATTTC 90414 29 100.0 32 ............................. ACCATAAAAAATGGGATATCTATCAGGACTTC 90353 29 100.0 32 ............................. CGATCTTCCGCCAGAACATCAGCAAGGCAAAA 90292 29 100.0 32 ............................. GAAAATCACCTTGATAGTTTTGGCCGCGAGAG 90231 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 90170 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 90108 29 100.0 0 ............................. | A [90081] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112045-108723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBJ010000018.1 Salmonella enterica isolate 4165_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112044 29 96.6 32 ..G.......................... GGACTCCGCACGTCGCGCCCGATCTCTCCTCT 111983 29 96.6 32 ..G.......................... GCCACCTGGTCGGCAAGCGCCGATGCCGTGTT 111922 29 96.6 32 ..G.......................... CCGATCATGCCGCTGTCTTTGTCCAGTACGCG 111861 29 96.6 32 ..G.......................... GCGCGTGCGGATACGTCAGACTGAACGTCTTG 111800 29 96.6 32 ..G.......................... GGGATCTGCGGTATCAACAAATCCGAGTCCGC 111739 29 96.6 32 ..G.......................... CCCCGAATGATGAATCGGGGCTGATATATTAT 111678 29 100.0 32 ............................. TATCTGCAGCTGAGATTAACGCAGCTACCGGA 111617 29 100.0 32 ............................. AATATTCCCGATCCCCAGCGGAGTGAGGGCGG 111556 29 100.0 32 ............................. TGCATTCCGTCGCACAACTCGGCGGCGAGGTC 111495 29 100.0 32 ............................. ATATTTTGGGTCGGTGGAAAATTGAGATTTAA 111434 29 100.0 32 ............................. GAACGACAATAAAGCATGTGGCAATTGCGCCG 111373 29 100.0 32 ............................. AACGCTGCAAAGACTGCAAGGACAAGGGAAGG 111312 29 100.0 32 ............................. CCCTACAGGGCAGGGCTAACTACAATCTTTTA 111251 29 100.0 32 ............................. ACATAAAAACTCTTGCTACCCCCGCAGGCGAA 111190 29 100.0 32 ............................. CCGCGCGTATACTCCGGCGTCGGTTGCCAGCC 111129 29 100.0 32 ............................. AGCGGTACCGCGCAGATAAGCTGGCGGCTGCA 111068 29 100.0 32 ............................. GAGCCGTGCCGGACGAGTTGTGGATGGCGCAG 111007 29 100.0 32 ............................. CGAGCGCCCGACGTCAGGCTTAAACACCACTG 110946 29 100.0 32 ............................. GACATTTCATCCGGGGTTATTTGCCATTCACG 110885 29 100.0 32 ............................. TTTTTGATTTTAGTGGGGATTTATATGTTAAA 110824 29 100.0 32 ............................. GACACCACAACTACGCGGCGGCAAAACTGGCT 110763 29 100.0 32 ............................. CGTTTGTACGTGCACTAAATTTATACGTATTC 110702 29 100.0 32 ............................. GCCGCATCGGCACCAAACAAGCGCTGGCTAGG 110641 29 100.0 32 ............................. ATTTCGCGAAACGGCGGTTTAACCGTCACGGC 110580 29 100.0 32 ............................. AACATAACCGGCACACCCTGGCAAAATAGCGC 110519 29 100.0 32 ............................. GTCGAATAAGTGCACATACATCCTCACTTACT 110458 29 100.0 32 ............................. ATGATCAGAACAGTGAGCAATTTGCCCTGAAT 110397 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 110336 29 100.0 32 ............................. CCGTAGATCGCATCACCGGCGCTACGCATCAG 110275 29 100.0 32 ............................. GCAGTAATCCCGGGTATTCCGAGTTATATGAA 110214 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 110153 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 110092 29 96.6 32 ..G.......................... AATACATTGCATCAAAAATACAATTCTGTCGG 110031 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 109970 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 109909 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 109848 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 109787 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 109726 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 109665 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 109604 29 96.6 32 ..G.......................... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 109543 29 96.6 32 ..G.......................... TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 109482 29 96.6 32 ..G.......................... CCCCGGTTGGCTTCGGCAAAACTGCAATTGCA 109421 29 96.6 32 ..G.......................... CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 109360 29 93.1 32 ..G..........T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 109299 29 93.1 32 ..G..........T............... GTTACTGTATTATCTCTTGCATAGACCCGGCA 109238 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 109177 29 93.1 32 ..G..........T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 109116 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 109055 29 96.6 32 ..G.......................... CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 108994 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 108933 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 108872 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 108811 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 108750 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 55 29 97.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGTACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //