Array 1 9-1135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESQ01000447.1 Escherichia coli strain KCJK8846 NODE_447_length_1242_cov_3.352466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 70 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 131 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 192 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 253 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 314 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 375 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 436 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 497 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 558 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 619 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 680 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 741 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 802 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 863 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 924 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 985 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1046 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1107 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-471 **** Predicted by CRISPRDetect 2.4 *** >NZ_VESQ01000057.1 Escherichia coli strain KCJK8846 NODE_57_length_20663_cov_8.652951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 76 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 137 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 198 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 260 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 321 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 382 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 443 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGGCGCACAACCCG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //