Array 1 1286-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLR010000211.1 Klebsiella variicola strain D43t1_170807_B11 NODE_211_length_8878_cov_12.5483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1285 28 100.0 33 ............................ CCGATGAAGTACACGATGGTACCCGCTGGCCAG 1224 28 100.0 33 ............................ CTATTTAAGTCATAGGGGGCAGGGTCATGTCGC 1163 28 100.0 33 ............................ CAGCTGCGATATGGTGTAGGCGTTATTCCACGG 1102 28 100.0 33 ............................ CGGGTCGACGTTAACCGGTCTGACGACGAACCA 1041 28 100.0 33 ............................ TTCATCCGGGCCAGCGCTGCAGCGACGGCTAAA 980 28 100.0 33 ............................ TGGGGTCGTCTTTGATTACGGAAGATGGGGAGG 919 28 100.0 33 ............................ TAACCAGCGTTTTTTCCTTACCATCAAACCGGT 858 28 100.0 33 ............................ TCAAATCAGTTGCTTGGTCAAGCCTTAGCCATT 797 28 100.0 33 ............................ CAGACGGCATATATGATTTATACAGACTGCAAA 736 28 100.0 33 ............................ CAATTCAGGCTGATAAGTCGCCGTGAGCCACTG 675 28 100.0 33 ............................ TCCTGCGACATGGATGACGCCGCGCGCGAATGG 614 28 100.0 33 ............................ TTCTTCCGGGCGCAATTTTCCCTGTGATATAGC 553 28 100.0 33 ............................ CAACTTTCATCTGTTAGGCTGGATTGTGGAGGA 492 28 100.0 34 ............................ CTCGATAACCCAAACCCAGGGGTTAGCATTCCAG 430 28 96.4 33 ..........A................. CACGTCTTTAACAGTGCCGGATTTCCGGTCCCC 369 28 96.4 33 ............T............... TAACGAGGATGTCATCAAAGGTGTCTGCCGGTG 308 28 100.0 33 ............................ CGCCGCTCCCGTCCGGCGTATGCGCCAGCAGGT 247 28 92.9 33 .......T...A................ CATAGCTGGTTTGCGCGGTGGTAGACACAAAAA 186 28 92.9 33 ...............A.....C...... CCCCGCTTTTGAGCACGCGCTGACATTTGTTCT 125 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATAATCGTATTAGAATAAATATTTTATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 355-144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPLR010000402.1 Klebsiella variicola strain D43t1_170807_B11 NODE_402_length_3446_cov_23.5132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 354 28 100.0 33 ............................ TAGAACGGGCTTTAAAACGGCTTACAGGACGGC 293 28 100.0 33 ............................ TTATGTTAGTAGGTACCACAATCACAGCGGACA 232 28 100.0 33 ............................ TCAGTGGACCGGCCAGGCGTATATCAATCTGGG 171 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTTGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGGTTTTTCCGCAGCGGTAACTACGTGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTATAGCGGTCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //