Array 1 4596-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRD01000067.1 Rothia kristinae strain RSA28 contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4595 28 100.0 33 ............................ CACGTGCTCGGCTTTCAGGAGCCCGTTATCGTG 4534 28 100.0 33 ............................ GGTGTGGGAGTCCATCAGCACCGGCGGCGGCTC 4473 28 100.0 33 ............................ GGATCCCGCGTTCATGATCATCGTCAGCTGCCC 4412 28 100.0 33 ............................ GGGGAATGATGGGTGCATAGATCGGCGCCTCGT 4351 28 100.0 33 ............................ CGAGTCTCCGGCCTGCAATGCCAGTGACGTTGC 4290 28 100.0 33 ............................ GGGCAGCACCTCCGGGAACAGCTCGGCAGCCGC 4229 28 100.0 33 ............................ CCGGGCGCTCTCGTCCTTGTACGCAGTGAGGGT 4168 28 100.0 33 ............................ CCAAGATGCGCGGCGTCGTGGGCTATCTGCTCG 4107 28 100.0 33 ............................ GCGAAAAAGTGGATGGGGTGCTCGGAATCGATG 4046 28 100.0 33 ............................ CCATCAATGAACCATCAAGGGGAACCCCTACTG 3985 28 100.0 34 ............................ GAACCCCCGTGCGCCAAGCGCCGGGGGTTCGGTG 3923 28 100.0 33 ............................ GCATGACCGAGAAGAAGAGCGCAGCCGATGAGG 3862 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 3800 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 3739 28 100.0 33 ............................ GCTCATGGGATCCATTGTGCGCCTTTCTAGAGG 3678 28 100.0 33 ............................ GACCGCTCGGTCGCTCTCGGGCTCAAACTTCGA 3617 28 100.0 33 ............................ GTTTGGACGCGCTGCTGGAGCAGTGAGATGTCA 3556 28 100.0 33 ............................ CCGAGGACACCATGACCGCAATGCTCAACACTC 3495 28 100.0 33 ............................ GCGCCTCGGGGCAGCCCCTGGGAGAGCAGGTGT 3434 28 100.0 33 ............................ CACTAGCCCCTTTGCCTCCAGCTCTGCCTTGGT 3373 28 100.0 33 ............................ GGGCATCCTCCATAGGGCCTTGGTGGGTGAGCC 3312 28 100.0 33 ............................ CGAGACCGTTCGCGAGTACAAGGCCCAGGAGGA 3251 28 100.0 33 ............................ CCCGACGTGCGTGCCGTGGTTGCGGCACTTCGA 3190 28 100.0 33 ............................ CACCGGCCCCTCCTTCTCTGTGGCCCGCATGAA 3129 28 100.0 33 ............................ CGTCGGCGGAATCACCTGCACCAGGCCCTGGGC 3068 28 100.0 33 ............................ CTGGCGGAGGTGCCGGTAGTCGGCTCCGAACTG 3007 28 100.0 33 ............................ GGAAGCCGATGTGCCGTGGTGGCTCCGCGGGCA 2946 28 100.0 33 ............................ CCCGCGGAATCGTCGCGCTGTCCATCAGAACGG 2885 28 100.0 33 ............................ GTAGCCCCAAAGTAGCCCCGGCCGGGTTGGGGA 2824 28 100.0 33 ............................ GGGCACCAGCTTCGGCCTCAACGAAGCCGCCAC 2763 28 100.0 33 ............................ GGTCTCCACGAAACAGGAAAACGCTACCAAGGA 2702 28 100.0 33 ............................ CCCATTTGAGGAATGCGTGGATCATGTCGAATG 2641 28 100.0 33 ............................ CGGGGTTCTTGTCGGTCTCTGCTGAGGCGGACG 2580 28 100.0 33 ............................ CTCGGCGGCCTGCAGCAAGTCAATCAGGCTGAG 2519 28 100.0 33 ............................ GGAGAGTCGCATGACCCCGATGACCGACGCGGA 2458 28 100.0 33 ............................ GAGGGCCCGCACTATTAGTGCGGGCCCTCTCGA 2397 28 100.0 33 ............................ CCCACCCGTTGTTCTTCAGGGTCTCGATCAGCT 2336 28 100.0 33 ............................ CCGTGCAAGCTTTTGGGGGTGGGAGCAAATGGG 2275 28 100.0 33 ............................ GTGATGGCCGAGACCACCGGACACGCCTACACC 2214 28 100.0 33 ............................ CTCAGCTGCCACCGGCGGAAGAAATCCGCCAGC 2153 28 100.0 33 ............................ CCCCGCCCGCCGAGGACTTCACCCTCGCCGACA 2092 28 100.0 33 ............................ GGTCCGCAGATCCGCGAGCGCATCCGTCCACGC 2031 28 100.0 33 ............................ CCGACAGGCCGGCAAGAACGACATCCCCGTCGC 1970 28 100.0 33 ............................ GAGTTGGGGCGCGGCGCACGGAGGGCGGTAATG 1909 28 100.0 33 ............................ GAAGGCCCCGCCCCTCACGATGGAGGGGCGGGG 1848 28 100.0 33 ............................ GCACATCGTGCAGGCGATCAACGCCCACCAGGG 1787 28 100.0 33 ............................ GCGTGTGAAGGCCGCTTACCTGGCGCTGCGCGG 1726 28 100.0 33 ............................ CTTCTCGGTGAGGCTGCCGAGCAGCCCCTCGAG 1665 28 100.0 33 ............................ GCGCTGGCTCGACAAGCGCGGCCACGAGTACAC 1604 28 100.0 33 ............................ GGTGCCGGTGAGCCCGCGGATGTCCAGGGCCTG 1543 28 100.0 33 ............................ GACGGGCAGATCGTGTTCGCGGACACTGACGGC 1482 28 100.0 33 ............................ GTGAGCGAGCACCTGGAGAAGACCGAACAGGAC 1421 28 100.0 33 ............................ CCCAGAGGCGTTGCGTTCGAACCGCCCCATGAA 1360 28 100.0 33 ............................ CAGGAGACGCGCCGGGGCCGCCGGGCGACGCTC 1299 28 100.0 33 ............................ GTTGTACGTCCCGACCTTGGGGGTCTTGTTCAC 1238 28 100.0 33 ............................ CTTGGCCTTGAACTTCTCGGTGAGGCTGCCGAG 1177 28 100.0 33 ............................ GCTGATCACCCTCGAGACCACCATCGCCGAGCA 1116 28 100.0 33 ............................ GAAGGATGTCCCCTCGAATCAGCTCAGCATGGT 1055 28 100.0 33 ............................ GTACATGCGCCCGGTCTGAGAGGCCCGCGCTTG 994 28 100.0 34 ............................ CTACGGGTGCGGGATGCTCACGCTCCACGAGGAC 932 28 100.0 33 ............................ GGTGTTGTAGCGGCTTGCAAGCAAGCTGGCAAG 871 28 100.0 33 ............................ CCCCGACCCCTACGGCACCACGGACGGCACTGA 810 28 100.0 33 ............................ GCGGGGGCGGTCGGGTCATCCGGGTCCCCCGGA 749 28 100.0 33 ............................ CTGGCAGAAGCTCTACGCCGATGCCCACGCAGG 688 28 100.0 33 ............................ GTTCTGAAGGGGAGCGATGGAGAAGGTGTGGGA 627 28 100.0 33 ............................ CAAGCTCCTCGCGGGAGGGGATTCCGCGAAGGA 566 28 100.0 33 ............................ GCCATCCGCGGACGCGTCCACCAGGGTCCGGTC 505 28 100.0 33 ............................ GACGAGCGCAACACCCCCTAAAACCTCCACAGA 444 28 100.0 33 ............................ GCGTCCCACCCGTCGTACCCGAGGGGTACCCAG 383 28 100.0 33 ............................ GAACACACCGAATTGTTCGAGGGGATCGAATTC 322 28 100.0 33 ............................ GGGTCCCGGCTTGCGAGGACCGCGCCTCTTCGA 261 28 100.0 33 ............................ GAAGCACGCAAAAGATGGAACGCTGTGGAGCGG 200 28 100.0 33 ............................ GAGCTGTGCCGCTGCGTCTGCCGCCTGAGGCCG 139 28 100.0 33 ............................ GGTGTAGTGCCCGGTGACGGCCGGCTCCGGGTC 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 75 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CCCTCCAGCTCCCCGAAACCCCCATCCCACAACAGCCCTCCCCGCGCATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1055 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRD01000142.1 Rothia kristinae strain RSA28 contig_142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 51 28 100.0 33 ............................ CGGACGAACGGCGGGCTTCCGGCAAGCGTTCCG 112 28 100.0 33 ............................ GAAGACCACCGTGTACATGCCCCTCACGCTGCA 173 28 100.0 33 ............................ CATGAGGGCGTCCTGTACAAAAGTCATGAAAAC 234 28 100.0 33 ............................ CACGCGCCGCGACCTGCGGGCCGTGTTCGGCTA 295 28 100.0 33 ............................ GCAGGCGCTGGCGCGTGTCGGGTTGCCGACCTC 356 28 100.0 33 ............................ CACCACGTGAGCGACGGCCAGAGAACCCCCTCG 417 28 100.0 33 ............................ CTGTTCCATGGACTCCCCCAGCTCGATGCGCAG 478 28 100.0 33 ............................ CCCGGCGGCGGGGGTGTCGTCGGGGAGGGTGAA 539 28 100.0 34 ............................ GCTGCCCCAGCGCAAGCTGTTCCGCCGCCGCTTC 601 28 100.0 33 ............................ GACCGTCCGCTCCGCAACTTGACGGACCCTGCC 662 28 100.0 33 ............................ GCGCAGATGCGGCTGCACTTCCCAGGACCACTC 723 28 100.0 33 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGC 784 28 100.0 33 ............................ GCAACGAGCGTCGGCGGGAAGGTCGGGGAGGAA 845 28 100.0 33 ............................ CGCGGCTGGGGATGTGCGGCTGGGGAAGAACCT 906 28 100.0 33 ............................ CGAGCGGCGGCTGAAAACGTCGAGAATGTTCAC 967 28 100.0 33 ............................ GATCACCCGTGCGCGCGCGAGCGGCGCACGGTT 1028 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCATGCGGGGATGAGCCGATGGGCCGCAGGGCGTCGGTGGGGTCGAACTTG # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //