Array 1 147668-150738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIH010000001.1 Rhodopseudomonas rhenobacensis strain DSM 12706 Ga0415280_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 147668 32 100.0 34 ................................ GGACGATCTGGCCCGGTTGCCGGCCTTGATGGCT 147734 32 100.0 34 ................................ CGCGACATCCAGCTCGACGCCGAAGCGCTTTCCG 147800 32 100.0 35 ................................ ATCAATCCGGTTGCTGCCAGGCATCTGGCCGCCTG 147867 32 100.0 34 ................................ GTTGTATCCGTGGCAATCTCACCGCTGATCGCCC 147933 32 100.0 35 ................................ CTGGTGGTAGGCACCGGCCGCGGCGCCAACCGCTA 148000 32 100.0 32 ................................ CGCCTTCGGTTCCGGCTTCGCTTCGTTGTCAA 148064 32 100.0 36 ................................ AATGACTGCTGTCTGGGGTGTGGCAGCGGCGTGCGA 148132 32 100.0 34 ................................ AGCGACGCATAGGGAATCCACACGCCGCGGTTGG 148198 32 100.0 33 ................................ CTCTCTCCGTTACTAACCAGATCGCCGAAATGA 148263 32 100.0 35 ................................ CAGAACCCCGGCGTCACGCTGTAAGGACTGCACCG 148330 32 100.0 34 ................................ CCAGCAACGTCCGGATGGGATGGCGTCGGAGCAG 148396 32 100.0 33 ................................ AGTCCGGCTGCTTCCAGCCAGTCGTTGATTCTC 148461 32 100.0 34 ................................ GCCGCGGGCTTATCGCCGCCCAGCGAGACCCGCA 148527 32 100.0 34 ................................ TCCTCCGAGGTGGCCAGCGCGGCCGTCATCGGCA 148593 32 100.0 33 ................................ GCCCTCAACCCGGCGAACAAGTCGATCGTGATC 148658 32 100.0 35 ................................ TTGCCGGGCTCGCCGATGGTGATGCAGTTGCCGAG 148725 32 100.0 34 ................................ GGCTGCGTGGACGCACGACGCGGCCCCGAACACG 148791 32 100.0 34 ................................ CCAGACGCGATCGACCCCATGCGCCGAGACTATC 148857 32 100.0 34 ................................ AGGCAAGTCGAGGCGGCGCGTAAGGCTGACGCTA 148923 32 100.0 34 ................................ ACCGCAGCGGCCATCAACGAAGATTGGATCCCTG 148989 32 100.0 35 ................................ CGAGAACGACGCATTCGAGCGTAACGAAGCTGCGC 149056 32 100.0 33 ................................ GTCGAGCCGGGCGCCGGTCTTGACGGCCGCCTC 149121 32 100.0 34 ................................ GCCATGCAGCTGATAACTGCCGTCGAGACGAAAC 149187 32 100.0 35 ................................ GGTTAGCAAAGGCAACAAGGCTAACTAACCGCTGC 149254 32 100.0 35 ................................ GTGGTCTGCCGGCCGGCGAGCGCTGCGGCCCGGGG 149321 32 100.0 33 ................................ TTGTTCCACGGGTCGCCCTGCGCGATCGAGCGG 149386 32 100.0 34 ................................ GCGCCCGATGCAGGATATCGGGCGGTAGCCACGA 149452 32 100.0 35 ................................ CGGTGGTTACGGCCGAGCTGTTCACCAGGCCAGTC 149519 32 100.0 33 ................................ AAGGAGGCCTGCAAGGCGGCTGGGATCGATAAA 149584 32 100.0 34 ................................ ATCCGACGACGCCAGCGATCCATGCAGTCCGTCG 149650 32 100.0 33 ................................ TGGTCGATCTATGGCACCGACGCCGTGTTGACC 149715 32 96.9 34 ...A............................ GTCCATGACGTAATCGAGCGCCTGTCGGTCGGTG 149781 32 100.0 34 ................................ TCGGCCCGCTGCATCGACGCGTGGTGGGCATCTG 149847 32 100.0 34 ................................ TCACCGGCCCGGCGCGCCCCGGCGTCGCGCCCCT 149913 32 100.0 34 ................................ CTTGAAGGCGCGCTGGCGGTCCGGGTGCCATTGC 149979 32 100.0 34 ................................ GTTGCGGCGCCGGAGGGCGACGGCCAATTCTCGA 150045 32 100.0 34 ................................ ATCTTCGAGAACGGCAAGCCGCGCTTCGAGCAGG 150111 32 100.0 35 ................................ GACGTCCAGGTCGATGGCGGGGCAACCAGCTTCAC 150178 32 100.0 33 ................................ GCAACGTCGGTCACGATGCCATCGATCTTGAGA 150243 32 100.0 34 ................................ CACCGAAGTCGCTGACGTTCATTCCGGCCAAGCT 150309 32 100.0 33 ................................ AGATTGCCGATTGATGCATTGGCGCCGCGACTC CC [150319] 150376 32 100.0 33 ................................ CAGCTCAACCGAAGCAAAAACCCCGGCAGGCCG 150441 32 100.0 34 ................................ TTCCTGGAGGCAGCGGAATGACACAAGCAATCGA 150507 32 100.0 35 ................................ ATGGCTTCCGAGGCGGCGTTGAACAGGATGCGCGC 150574 32 100.0 35 ................................ GTCGATAGCGAAGATCAAAAGCGCCTTGGCTGAGC 150641 32 100.0 34 ................................ CCTATTCGCCGCAAACCGGCGTCAACTTCGTCGG 150707 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ==================================== ================== 47 32 99.9 34 GTCGCTCCCCGTGCGGGAGCGCGGATAGAAAC # Left flank : GTCAGCACGGTCGAAGCGGGCGGGCCGGCGCGCTTGCGTCGTGTCGCTAAAGCCTGTCGTAACTATGGTCAGCGCGTGCAGTTTTCCGTGTTCGAGATCGAGGTTGATCCGGCCCAATGGGCCACTCTGAAGGCGAAGCTCGAGCGCTTGATCAAGCCGGAGCACGACAGTCTGCGTTATTATTATCTCGGCGCGAATTGGCAGCGTCGGGTGGAACATGTGGGGGCGAAACCGGCAACCGATCTGGCCGGGCCGCTCATTGTCTGAGCGTTGGCTGTCTGAGCGTTGGCTGTCTGAGCGTTCGGGCTCGCCGAGCCCGTGCGCGCGAACCTCAAGCATGACCCGATTCGTCGGGGGCTTCGCGCGGGCGGGAGCTGTTTGAAATCGTTTAGTTATCGGCAGGCCGCCGCCGATCAACGTCGATACTCGGTCGTTCGAGCTTCTCCATTCGCGCGTCCCGGCCAATTTCATTTGAAGACAGAAGAGCCTAGGAATAAGCC # Right flank : CGCCTACAAGCTCGCCCGCGTCACCCTATCGCGGCGGCACCTTTATGCGGCTTTCGGGGATGGTCCATATCTTCGTTTGGAGGTCGAATTCCGACCGTTCCGCGGCACGCAACTCGCCGGGTCGCGGGAACAGGAATGCCATGAGCTTCAGAGCGGCGCGCGTCGTCGGTTGTCCATCAAAACTGTCAATTGCACGCAGCAGCGCACCGAACGCCTGACGCTCCGTGATGGCCGCTCGCGGCGTTACAGTTGGACTCGTAAGCGCGCCCCGAAGGGAAAAAGTGGGATCGTTCTCCGCTCGCGCCGTTGCAATGGCATAGCGGAAGACGCACCCGATGGTGCTTCGGAGACGGCGAGCACTTTCGAGCCGACCCCGGACTTCGACCTTGCGACGAACCGTCAAAATCTGCCGCGGTGATTTCAGCAATGGGACGCTGACCGAGCATCGGGCGCGCGATGCCAAGGAGCCATTTGGTCTTCTCGATGGTGCGCTCCGAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18791-20147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIH010000010.1 Rhodopseudomonas rhenobacensis strain DSM 12706 Ga0415280_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 18791 36 100.0 30 .................................... TTGTGCGCGCTTGTCGCGGTGGTGGCTGTC 18857 36 100.0 30 .................................... AGTAACCTATCTGTCGCGTTACACGTTGAA 18923 36 100.0 30 .................................... TTCGACGCGCTCCACACATTGGCGCCGTCG 18989 36 100.0 30 .................................... GGCACGGTGATCGACGTGTCGACCGAGGCC 19055 36 100.0 29 .................................... ACCCCGCATCTGTTCGAACTGCAGCGGCT 19120 36 100.0 30 .................................... CGGCCGATGGTCCTTGTGCTCGCCGCCGAG 19186 36 100.0 31 .................................... CAGATCCACCATGTCGACGAATTCCCCCTTC 19253 36 100.0 31 .................................... GGGCGTGATCCACGATCCGAACGGCAGGCCG 19320 36 100.0 30 .................................... GCCATCACGAATTGACCAACGTCGCCGGCC 19386 36 100.0 30 .................................... CGGGTTTCGCGCGATCATGTCACCAACTTT 19452 36 100.0 30 .................................... CAATCAGGGTTCATGGCCGGCATCGCGGCG 19518 36 100.0 30 .................................... CCTGATGGTCGTCTGCCAGCTTGCGGTTTG 19584 36 100.0 30 .................................... GGCTTTCGCGGCATGCATAGGGTCCGACCA 19650 36 100.0 30 .................................... GCCTTCGCTCAAGGCATCTTCAGCCGTCAC 19716 36 100.0 30 .................................... GGGGTGTATGCAGGCTGTGAAAGGCCGCCC 19782 36 100.0 30 .................................... CCGACGTACGGCATCCAGATGGGCCGCGCC 19848 36 100.0 30 .................................... AAATGGTACGGCAGCAACGTGTGGGGCCTC 19914 36 100.0 30 .................................... ACTTAAGGAAAGCGGTCGTCTTACGCCGGA 19980 36 100.0 30 .................................... GACGCCGATATCAACCAAAAAGGTGCCATT 20046 36 100.0 30 .................................... TGAAGCCATTGCTGCGGCGAAATCCGAGAT 20112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 AGTTTAGCGGACTGGTGATTGAGGGCCAACCGAAAC # Left flank : CCAAAGCCTATGCCGGCGAAGCGGACCGCTTGATCTTGCCGAAGCCCGGCCTGCCGCTCGGCTTTTGATCCATGGCGCCGATCGGCAACGGATCGCCGCCGGCCTTGTCAGGTTATCGAATCATGTGGCTCGTCGTGCTGTTCGACCTTCCGGTAGGCACCAAGAAACAACGCAAGGCCGCGACCGGCTTTCGCCTGAAACTGCTCGATCTCGGCTTTGAAATGACGCAGTTTTCGGTCTATTTACGGTTCTGCGCCGGCAAGGAGCAGGCCGAGGTCTATCAACGCAAAATCGAGCAGGCGATGCCTTCGTCGGGCAAGGTGCATATTATCGCCATCACGGACAAACAATATGAAAACATCCGCACCTACCGGGGACGAAACCGTGAACAGAGCCCTCAGAATCCGGCTCAATATGCCCTGTTCTGACGCCGCCGGCGCTTTCAGGCGCTGCGTTTCAACGAAAAAAGGCCTTGTTTCCAAGGCCTTAAATCATGAGCG # Right flank : CTGCGAAAGCACAACCGAAACATCCATCCGGGGCTGATCGCAGTGGATATGCCGTCCGCCAACGCTGCCGCAAGCGCATTGAGGAGGTGTTCGGCTGGATCAAGGCGTCCGCCGGGCTCGCCAAAGTCAAGCTGCGAGGCCGCGACCGCGTCGATGCCACCTTCACCCTGGCACTGGCCGCCTATAACGTCATTCGACTACCAAAATTGCCGGGCGCAACCGCGTGATCGGCAACCGAACGAACGTCAAGATGGTGGGGCGATGCGTTCCAGTCCGAGGTGCCGCCACACATCAAACTCCCTCCAGCACGCTGACATGCACGGCGCGGGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTCTGACGCCCGGCTCGCGCTACTACCAGAGGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTAGCGTCGGCGATCCGTCCGCGGTCATACGTGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTGAGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCGGACTGGTGATTGAGGGCCAACCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 21236-20475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIH010000010.1 Rhodopseudomonas rhenobacensis strain DSM 12706 Ga0415280_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21235 36 94.4 30 T.......A........................... CACGACGCCCTCGCTTCGCTTGCCTGGGGT 21169 36 100.0 30 .................................... GGCCGAGGCCATCGCGTCGTTCGCCGGTAA 21103 36 100.0 29 .................................... GAAAACGACACCGGCACCGTTGACGCAAA 21038 36 100.0 30 .................................... GAACATCCTCGGCAAGAAGGGCGGCAAGGC 20972 36 100.0 30 .................................... CACGATGATCAGCGGCCGGTGCCGCTTCAC 20906 36 100.0 30 .................................... AGCAAGTACAGCGGGACCAAATTCGTCACC 20840 36 100.0 31 .................................... GAAGGTCTTGTTGCTGTTGGCCGGCGGCTGC 20773 36 100.0 30 .................................... CGAGATGCCGGTCTATTTCGCGCTCACGCT 20707 36 100.0 30 .................................... AGGATTGTTGCGTCCGACATAGGGCGACTC 20641 36 100.0 30 .................................... ACGTATGACCGCGGACGGATCGCCGACGCT 20575 36 100.0 29 .................................... CTCTGGTAGTAGCGCGAGCCGGGCGTCAG 20510 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.5 30 AGTTTAGCGGACTGGTGATTGAGGGCCAACCGAAAC # Left flank : CTGCGCTCACCGCCCACCTGGGACGTGGCCCACCGCACGGTCTATGTCTGCGAAAATCCCAATCTGATTGCGATCGCCGCCGATCGCTGGGGCGCCGATTGCGCGCCGCTGGTCTGTACCGATGGCATGCCCGCGGCCGCGCAACGGTGCCTGTTGCTGCAACTGAGCGAAGCGGGCGCGCGGCTTCGCTATCACGGCGATTTCGATTGGCCCGGATTGCACATCGGCAACCAAGTCATGCGTGAGCACAACGCCGAACCGTGGCGCTTCGGCGCCGCTGACTACGCCGCCGCGGCCGCAAGGATCTCATTCTTCGGCCTGCCTCTGCAGGGTAAGGCGGTCACAGCACATTGGGATGGAGCATTGACGACGGCCATGCAACAATGTCGGGTCGCAATCCCAGAGGAATTCTTGGCAGACTCGCTGTTGCAAGATCTGGTTTGCAAATCCTAGCAGGCTGTTGAAGAAGTGTTCGACGGCGGTCGATCTGGGGTGAATTT # Right flank : CCGCGCCGTGCATGTCAGCGTGCTGGAGGGAGTTTGATGTGTGGCGGCACCTCGGACTGGAACGCATCGCCCCACCATCTTGACGTTCGTTCGGTTGCCGATCACGCGGTTGCGCCCGGCAATTTTGGTAGTCGAATGACGTTATAGGCGGCCAGTGCCAGGGTGAAGGTGGCATCGACGCGGTCGCGGCCTCGCAGCTTGACTTTGGCGAGCCCGGCGGACGCCTTGATCCAGCCGAACACCTCCTCAATGCGCTTGCGGCAGCGTTGGCGGACGGCATATCCACTGCGATCAGCCCCGGATGGATGTTTCGGTTGTGCTTTCGCAGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTATCTCGGATTTCGCCGCAGCAATGGCTTCAGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTAATGGCACCTTTTTGGTTGATATCGGCGTCGTTTCGGTTGGCCCTCAATCACCAGTCCGCTAAACTTCCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCGGACTGGTGATTGAGGGCCAACCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //