Array 1 40213-37254 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJCX01000018.1 Xenorhabdus kozodoii strain DSM 17907 Xkoz_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40212 29 100.0 32 ............................. GTAATTATGTATCCAACAACCATTAGTCACAC 40151 29 100.0 32 ............................. AAAACATTAGAGGATAAACACAATGAAACTAT 40090 29 100.0 32 ............................. CCAGTCCAACCCGTGACGTTCATCGATAAACG 40029 29 100.0 32 ............................. GCACTTTTCGACTCACTGACGCATGCCAATTT 39968 29 100.0 32 ............................. TAAGATGTAGGGATACTGGTGATTATGAATAT 39907 29 100.0 32 ............................. TCCATGCCGACTGAATCCGCATAATCGATAAT 39846 29 100.0 32 ............................. TGTTGAAAACTTACCCAACGATGATGGTTTTG 39785 29 100.0 32 ............................. AAAATTTACTTAAAGAGTCACAATCTGAGGAT 39724 29 100.0 32 ............................. AATCGTTGGAAATACTGAAAAAATCTGGTTTC 39663 29 100.0 32 ............................. TCAAAAAAATATTGTCCGATGAAAATGAGCCC 39602 29 100.0 32 ............................. ATTTGGACTCCAACAAAGAGCGTTTGACTGAG 39541 29 100.0 32 ............................. GCATGAAGAAGAGGCTAAAGAATGACCAAATA 39480 29 100.0 32 ............................. CGTGACGATGGTTATTCTAATACTGGAATTGG 39419 29 100.0 32 ............................. ATATATTTCACTCCAACATCAATCATGTATAG 39358 29 100.0 32 ............................. AATGCTGAGTTCAGCTTCCTCATCCGCATACC 39297 29 100.0 32 ............................. ATTATTCAGGGTTTCTGTATCAAAACATATTT 39236 29 100.0 33 ............................. CCTCAAAAACAGGCTATTCAATTCGCAATGACC 39174 29 100.0 32 ............................. GGACGGACTATGTGGTCGGTCAGGTCTGGGGC 39113 29 100.0 32 ............................. TGGGATGCTTCATCCCCTCAGAGTTTGGCAGA 39052 29 100.0 32 ............................. TCTGCCAACTGATTTTTTGCGGTTTTAACCTG 38991 29 100.0 32 ............................. GTATTAGCGTGTTTGGCGGCTACTGTGGGGTT 38930 29 100.0 32 ............................. AAAAAAATTACGATGACATAGCAGTTTATGTA 38869 29 100.0 32 ............................. GAAATAAATATGGCGACAATGACTACACCAAT 38808 29 100.0 32 ............................. CCAGTATTCCCGCTGGTGTGATTTGTAATTTC 38747 29 100.0 32 ............................. CATTCCATTTTTAGGGAAATAAGGCACACGTA 38686 29 100.0 32 ............................. TTAAATTTAATCCATGAACATTTTCTTCTTGG 38625 29 100.0 32 ............................. GTAACCAATGGCATCTTCAAACCGGTCAACTT 38564 29 100.0 32 ............................. TTAACAATCGCTATTTCAGTCGCATCATTTTA 38503 29 100.0 32 ............................. GGTGTGTATGAAAGTGATCGGGTTAATAAAAA 38442 29 100.0 32 ............................. CATGGAGTAAACGACACGTTATGGCAATTACT 38381 29 100.0 32 ............................. TTTTGTCTGTACTGACACGTTCAATTTCATCG 38320 29 100.0 32 ............................. TATTCGAGCAGAAGATGGCATTCCGCTACTGA 38259 29 100.0 32 ............................. AGGTTCACGCGTCCCGACTGATTCGTATTTGC 38198 29 100.0 32 ............................. TTATAAAAATAATAGGAGATAAATAATGGCTA 38137 29 100.0 33 ............................. CCTAATCGCTCTCGCGCCCACTCAGTCTCATTC 38075 29 100.0 32 ............................. TTATTCACCTTGCTGTTAATGTTCTACTTTTT 38014 29 100.0 32 ............................. ACCGAGTTCCGCAACGATATAACTGACTATTT 37953 29 100.0 32 ............................. ATTCTGGGGGCTTGGAGATGGCCCAATTCGAA 37892 29 100.0 32 ............................. GGGATATAGGGGTATTGTCTTTTGTAATATTG 37831 29 100.0 32 ............................. CCGTTAGAAATTTATATCGCCGGGCAATGATG 37770 29 100.0 32 ............................. GCTTAACTCCTCCATCGCCTCATGCATGATTT 37709 29 100.0 32 ............................. GGCCAATGACTATCCATCTAGAGCCGAGTCAG 37648 29 100.0 32 ............................. TACTTTCCCTTATATCGAAAGGAGCAAAAATA 37587 29 100.0 32 ............................. ATTTACATGCTACGCAGAAAATTATTACTGAA 37526 29 100.0 32 ............................. GAGTCGTTCACGAGGGTACGGTGAAAGGGAGG 37465 29 100.0 32 ............................. ATTACGGGGATAATCCGAATGATTGGATTCCT 37404 29 100.0 32 ............................. GAATTAAAATGTCCCGTTGTAGCATTGGCTCA 37343 29 100.0 32 ............................. GAAAATTATCTAAGGATAGATTTTAGTAAAGC 37282 29 86.2 0 ............CA.............TA | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.7 32 GTGTTCCCCATATGCATGGGGATAAACCG # Left flank : CCATGAGGAGGAGCAGTTGCAGTGGTTATCACGCAAATTAGCAGGAGCGGCGTTGTTATCGACGGCTTGGGCCACACCGGAATCCCCAATCTATTTTTGCAAAGATGATATCAGGGGGAAAATCCAGCCAATATGCTTTGAGGGGCAACTCATTGTACAGGAAAGTGATGCCTTTATTGCCCTTTTAAATAAAGGGATTGGGCCGGCTAAAGCGATGGGGTGTGGTTTACTCTCTTTAGCGCCGGGTTGATATTTTTGTTGTTTGGGGATTGGAAAAGTTTAAGCCGTTGGAGGTAACACTGCCGACAATGTTATCGCGTATTTCTTTTATACTTCGTGCGGATAATTTCGGTAGATTGTAATGGATTACATTTCTATTTTTTTAACACATTGAAAAATATGTGTTTTTATATTTGTTAATAATGTGATTTTTAAGGGGAAAACGTGGTAGAGTTTTTCCTGCCAAAAAAGTTCTTTAAAAACAAAAGAATATAGTTAGA # Right flank : ACAATCGTTATTGACCAACAGAAATACGCGTTAGGATCTCATTGAAAATAAAATAGATTAAAAGCATCCGGTAGTAAATTATTTCCAAGCGATTAAATTAGGCGCAAAATCAAACATTGTTGTTACCCTTCGTGAAATAGTAATAAAAAATGACATATTGTCATTGTTTCGGCTTTCAATTTGGGCTGTCTGCGTTTATTATGCGCGCTTCGTATTTTCAACCGGCGCCACTGGCTTTGAGCTTTAGCGGAGAAATGATGCCTCCTCTAGCTGACACAGTCTTTTCCCGTGGCGGTTCTATCTGCATTATTCCAAGGGATAGATGATAGCATAAATGACTGAGAACACCTCTCTGACACCACTCGTTGAGTTGAAAGCCTTGAGTAAGGGCTTCGACGGCAAACAAGTTATTTCACAGCTCGATCTGACAATCAATGATGGCGAGTTTCTGACCATCCTTGGGCCATCCGGTTGTGGCAAAACCACAGTACTCCGTCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATATGCATGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCATATGCATGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14602-14330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJCX01000033.1 Xenorhabdus kozodoii strain DSM 17907 Xkoz_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14601 29 100.0 32 ............................. GTTCATTTCGTGATATAGAGGGATAATAATAA 14540 29 100.0 32 ............................. ACGTTCAAACTGAAAACATTACAGCCATTATC 14479 29 100.0 31 ............................. GTGTCGGTTGTCTCGATGGCTCACATGATTT 14419 29 89.7 32 CG.............A............. TTTTTACTCAGGCGGCGTTTATAAGAGATATC 14358 29 82.8 0 ..A............A..........AAC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GAGTTCCCCGTGGATGCGGGGATAAACCG # Left flank : CTTAATTGAAGAGGTGCTCGCGGCGGGCGAAATTTCCCCGCCGCCGCCGCCCGCGGATGCACAACCGCCCGCCATTCCTGAACCGATATCCATCGGTGACATTGGGCACAGGAGCCAGTAAAGATGAGCATGACAGTTATCGTCACAGAAGCCGTTCCTCCGCGATTACGGGGACGTCTGGCGATTTGGTTGCTGGAGATACGGGCAGGGGTTTATGTTGGTAATATCTCTCATAAAATCAGGGAGATGATTTGGGAACAAATCACGGAATTCACCGAAGATGGCAACGCAGTTATGGCATGGCAGACTAATACCGAATCTGGCTTTGATTTTCAAACCGTTGGTGAAAACAGAAGGGAGCCGATAGATTTTGACGGCCTGCGTTTAGTGAAATTTAAGCCACTTTCTGAGGATTAGTCTGGAGGGGCTAACAAGCGATTAAACATGGTAACATTTTTTCTGTTAAAAAAATGGTTTTATAACAATGGGTTATTTTTAGG # Right flank : CTTTCCAAGCGATTTCCTGATATTTCAATTAGCTAAAATCCCAATCACCATAAAAAATAACTACAATATTCATTATATTTACCCATATATTTAAAATAAAATTCGATTTGTTTGAGATAAATAAAATAAACATTCCAAATCGCACAACATTCCATCTAAAAGCATAATTGGTTGATGATTGCCAAAAAAACCTATGCTAATCTACGCGCCTTTCCGTCTTAAGATGTTCATTTTTTAGACAAAAAATATTATAGATAAACAAATAGCAAAAATAGGAAGCAAATTTACTTATGAATTTCACTAACACCAGCAAATTGTTAGCCGCGACGCTGTGCCTTGCCGCCTCATACAGTTATGCAGAGAGTGATCGCCCGCTTTTTTCATTAACGATGTCGGAATCTGGCGCTCAGCAAATGAATAATGACGGTAGCTTATCCCAAACGACCAAGTCTGAATCTCGTATCCTACCAATTTGGGGGGATGCTGCACGAGCAAAAGGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGTGGATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTGCGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25854-24971 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJCX01000033.1 Xenorhabdus kozodoii strain DSM 17907 Xkoz_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25853 29 100.0 32 ............................. GCTTCTTTAAAGATCTTCGGCGGCAAAAATTG 25792 29 100.0 32 ............................. TTATCTTTAATGGTTGTTTTTTTGTTTATTAA 25731 29 100.0 32 ............................. AGTTTTTGGTCTCACTGGGATTTGAGGTAGAT 25670 29 100.0 32 ............................. GTATTGCTCCTGGAATGATTGGAACTCCGCAC 25609 29 100.0 32 ............................. TGTTCTCACATGTGTATTAAAAACAACTGCAA 25548 29 100.0 32 ............................. GCCGAGCTGCAAAAAGCCATTGATTTAATTTC 25487 29 100.0 32 ............................. GATATTAATAATGATGAAAAAATACATTTTTA 25426 29 100.0 32 ............................. CATGGTTTGTCGATCAGGGCGAGCGGTTAGGC 25365 29 100.0 32 ............................. AAATACCAAAAGAAGAGGCCTGCCCAAAGAAC 25304 29 100.0 32 ............................. GATATTAATAATGATGAAAAAATACATTTTTA 25243 29 100.0 32 ............................. CATGGTTTGTCGATCAGGGCGAGCGGTTAGGC 25182 29 100.0 32 ............................. AAATACCAAAAGAAGAGGCCTGCCCAAAGAAC 25121 29 100.0 32 ............................. GATATCAAAAACAAACTTTCCGCTTACCGTGA 25060 29 100.0 32 ............................. TCGGGATAAAAACCGAATAGCCAAATTAGCCA 24999 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGTAGGTACGGGGATAAACCG # Left flank : CAGCAACATCTTGTAAAGCAGGGCGTTTTTTCTTCATTTTCAATGTAATACAATCAGTTATTGATAGCGACAGATGGATAGCTAGCGGTTTTAACATATTTATACAGCATTACAACACGTTTTATAGTGAAAAATGCCAATATACTCGCATCTCGTTAATCATTAATTCCTAAAATTGTGATGAATTACACGTGCTTGAATAAATACGCCAAAAGGCTTAAGGCATGATCCAACACCTTATCCCCGAAGTACGCTGTAGTCCAACATACTGGCAGGTATCGTTGTGAGTTAAGACCAACAGGTCATTTTGCGATTTATGTGATGAAAGTTTCCTCATTTTATAAATGAAATCGCATGATATGGATGAAATGAGATCTGCACTACAAATAGTAAATAATCAGAAAAAATGAAAAGAAAAATTTGGCTGATTTATAGGCTAAAAAAATGGTAGAATTTTTGCGCTCTGAAAAGGTGTTATAAAACAGACGGATAAAATTAGA # Right flank : GATGACTGGAAGGGGCTGAATAAGATAAGAACCCCTAACTGTCCATTTTAATGCTAACCAAGCTATGGATAGCTGGTTTTACAAAAGTTCCGTAAAACCCCTCACACCCCCTTCATTGCTGGTCAAAAAATCAGCAACTGGTTCTCTATCATTACAACAACCAACCAATCTTAACAGTAAGTAAATGAGTATATAAAACAAGCACCAAAAGATGTAAAATATCTTAACCAATTAAAAACGAGAAATAGTGAATGTTTAATCTTAAACATATTGGATCTGTAGTAAGAAACAACATTCAGGCTATTGTTGATGTTCTTGACCTTAACCTTGCCGTGGGAGATATTTCAGATGATGATTATCTCATCTTGTCTCGTGGCTATGGTGAACTTTGTTGGGATGATAGTTTGTCTAGGGTGGGAAACAGAGAGGATAAGTTTGAGTTTTGTATCAAACTAGTAGAATGTGGGCATGTACAAGGGCCACCATCAGGTCTAGCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15931-15353 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJCX01000006.1 Xenorhabdus kozodoii strain DSM 17907 Xkoz_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15930 29 100.0 32 ............................. CCAGAAACCGCATTCTGACCGGTACGATTGAG 15869 29 100.0 32 ............................. CCACTTCAACGTCGTGAATCAGGTGTCTGAGC 15808 29 100.0 32 ............................. ATACCATGATGATCCAGCGCGTTGAGCAATCC 15747 29 100.0 32 ............................. AAAACAGTTCTGTGCAACTGTCTATCGATGTG 15686 29 100.0 32 ............................. AATTAAAACGTTTTGTGTTTATTTTAACACAG 15625 29 100.0 32 ............................. ATACATTGCGCCCTACATTGGAGAGTCTCGAA 15564 29 100.0 32 ............................. CATCGGTTTTGTGCTTAACGTCCATACTGCTG 15503 29 100.0 32 ............................. TCGGAACAGCACACTACCTACTGTTTAGACCC 15442 29 100.0 32 ............................. GTGCCTTTCCCCGTCCCGATACGGCTGCGCCA 15381 29 86.2 0 ........................TTT.C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGTGCTTACGGGGATAAACCG # Left flank : ATTGTTCGATGAAACAGTGGGCGTTTTTAACGCTGGATATGCCACAATGGTTGATTGGTATTTTTGCGGTCTATTTACTGGTGGGCATATTGGTGCTGGTGAGTCAGGTTGTTAAAACCCAGCATAGAGCCTGAGTAAGAAAGACCCTTTTTACAGAGAGTATTAACGTTTGCCCTAAAGGGGTCATAAAGGCTCCTTTAATACCTTTCTAATTCAGCCTTATCAGAGCAATTTTCTCAATTCTATTTGTTCGATTCCTATTCCTGCCTTTTATGTTGTCTGACGATCATCAAACGCCAGCAAGTAATGATTGAGATTACCATGATGGAGATTTCACAATTTGATAGATGAAAATTAAAAATATGGATGAAATGCGATCTGTATTGCAGAGGAAGAATCGGGAAAAATAAAAGCAAAAATTTTACTGAATTATAGGCTGAAAAAATGGTAGAATTTTTACGCTTGAAAAATTTGTTATAAAACAAACGGATAACGTTAGA # Right flank : TGTAATTCCTTTTCCGTTGTGATATTGTCTTTCCGTAACGTGTGATTCACAGCATATTTTGCTTGCCATGTTTTAGGGTTGATTAAGTAATGTTGCCGAAAACGTTTAGAAAAATGACTTGGGCTGGAATAACCCACTGCGGCTGCGACCTCAATGACACTCATTCCTTTCTTCAACAAATCTTCTGCTGTGGTCATACGGACGTTTTCCAGATACTGGTGGAAAGTACGGAAAACAACCGCACGGAATCCCTCTTTTAATTTACGCTCATTCAAACCCACGGCTCTTGATAACGATTTTATCGTCCAAGGATAATGATAATCGCTATTAATTATTTTTATCGCATTATAGACAGCACGCCGCTGCAAACCGCTAATCACATTAAATTGGCAATCGTAAATTTGGGCAGTCACACAAGCAAGAATTTCTAATGCCTTGGCTTTTAAATAAACCTTTCTGACACTGCCAGTTAATTGACATTCTTCTATTTGATTAACTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCTTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //