Array 1 1019-4231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOB010000029.1 Vibrio cholerae strain C18s.b Scaffold29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1019 28 100.0 32 ............................ CATCAATGACCTCATTGGTTAATGAGGTTTGG 1079 28 100.0 32 ............................ ACCAAGGCCAAACGCCCCAGTCAGCATTAGCT 1139 28 100.0 32 ............................ GCACCCGCATCACTGGCGATGCGGCCAATGGC 1199 28 100.0 32 ............................ AATACCAAGCCCTGTGGCATCAATACAAATAC 1259 28 100.0 32 ............................ ATACTTCCCGACACGAACCGGAATGCCGAACA 1319 28 100.0 32 ............................ TATCACTTCATCACTACCGAATCGCTGGAGGT 1379 28 100.0 32 ............................ GCTCAACTGCAAATATTGCCCTGCCTCGTGGG 1439 28 100.0 32 ............................ AATAGAGATACAGTGACGTTTTCGTGTGTCAG 1499 28 100.0 32 ............................ AACAGTTTACATTGTGGTGGCAACTCCTGTCG 1559 28 100.0 32 ............................ GAATGGATAGCCTATATTCGCTTGCTAGGTAA 1619 28 100.0 32 ............................ AAACAGGAAAAACAAGATGCGGCCATCTACGA 1679 28 100.0 33 ............................ TCATTACCGCCGCATTCAACCGCCCACTAGCAT 1740 28 100.0 32 ............................ TCTCGATGAAATTGAGCGCCGCTTTGATATGC 1800 28 100.0 32 ............................ TGACTGGGGTCAAATTGATACGGCAATTAGAG 1860 28 100.0 32 ............................ AGTCGCATTTGGTCCACGCATAGCGGCGCTCA 1920 28 100.0 32 ............................ CTCATCGGCTCAAAACTGGTGACTTCACCACC 1980 28 100.0 32 ............................ GCTGCGTATCGAACCTACTTACGCCAAGCGTT 2040 28 100.0 32 ............................ GCTGCGTATCGAACCTACTTACGCCAAGCGTT 2100 28 100.0 32 ............................ CAAACGGAACCCTCTACAACCAATCTAATGTC 2160 28 100.0 32 ............................ TGTTGCGTGTAAAGTGCGGCAGCGCAAAGGCT 2220 28 100.0 32 ............................ GTATCAAAGAGCACGGTGAGCAGACTAAACAT 2280 28 100.0 32 ............................ ATTAACGATTCGGCTTGATGCAACAAAAGGCG 2340 28 100.0 32 ............................ AACCCAATCGGTAAATGTCTCGCGAACGTAAT 2400 28 100.0 32 ............................ GATTGCAGATCGGTTTGATAGGCCTTGGTGAT 2460 28 100.0 32 ............................ TGGAGCTACTGGTGCAATCAAAGCGTGCGCAC 2520 28 100.0 32 ............................ AGCGAGCTGCACCGCATACCACTCACAAAAAC 2580 28 100.0 32 ............................ GCGTACCATGTGTATCCTGTTGCGCCATTTCC 2640 28 100.0 32 ............................ AGACGAAGATATTGTCGAGAACGCACCAACAC 2700 28 100.0 33 ............................ AATCATCGTAAGTCCAGATATCAAGGCCTGAAT 2761 28 100.0 33 ............................ CAGTTCTGGCGCAGTGTGTTCACGTCCCATTTA 2822 28 100.0 32 ............................ CGACAACGGACCTGCTGGATGGTATTGCGCGT 2882 28 100.0 32 ............................ AGTGAATGAGTTATGGGCTCAAGTTGAAGAAT 2942 28 100.0 32 ............................ ATTGCGCAATGGCTTATTGAAATCGAGTACAG 3002 28 100.0 32 ............................ GTGCTGAAAGATGGCTCAGAAGTTTGGCTGGC 3062 28 100.0 32 ............................ GTGAAGAGGCGATGGCCGCTGAAGCTTTGTTT 3122 28 100.0 33 ............................ TGGGGGCAGGTAAAGTGGAGAAAAGATCCGGAA 3183 28 100.0 32 ............................ TTCTGGAACTTCGCAGTTGTAGTATTCACGGC 3243 28 100.0 32 ............................ AATTTCCAGCGCTGCATCAAGTGACATTACTT 3303 28 100.0 32 ............................ AAGCTTGAGACTGGTAAATATCAAGACCATTC 3363 28 100.0 32 ............................ TTTTGCGATTTTCCTTGATTGGTCATTTGGCC 3423 28 100.0 32 ............................ TTGATAGCCATGCTTTTGCAAAAATCGTTTTC 3483 28 100.0 32 ............................ TTTAATGGTTTTCTTTGCCGTTCTTAGCCCTA 3543 28 100.0 32 ............................ TTTTGTTTTTGTTTCCAATACGTCAGGCGAAG 3603 28 100.0 33 ............................ AAGACATTGCAAACAAGCACGTGGGCGATCTAT 3664 28 100.0 32 ............................ ACCGTCATCTTCACTGAACATGATGGTGTTGA 3724 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCCGTGT 3784 28 100.0 32 ............................ ACTTACAAGTCAGCTCGCACGACGCCTCAGCC 3844 28 100.0 32 ............................ ACTTCGACGATTAGGTTAGGCTCGCCGTGGAT 3904 28 100.0 32 ............................ GTCATGTGCATTTTTATAATGCGACTGGTGGT 3964 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 4024 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 4084 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 4144 28 100.0 32 ............................ ATCCGGCACAGTCGAAGAAATCGGCTGATTAA 4204 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAAGCTTATCCATCATGATCTCGTAGGTGCTTGCAGGGACGCAGTAGAAAGCCGGCTCATTTCGGTTGAGTACAGCAACAGGAGCACCGAAGGCGCTAGTTGCAACTTTCATTGGGTTTGCTTTAAATTCGGTAATGCTTGCTGCAACATCAGCTAGGATTCTAGTGGTCATTTAATCAGTCCTTTATGTGGTCTTTAATTGGGTCATTATAGTCTTGAAAATGCAGTTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGTAGTGGTTACGGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCAGAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2192-2519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOB010000026.1 Vibrio cholerae strain C18s.b Scaffold26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2192 28 100.0 32 ............................ CAAAGGAAAACGCCCCCGTTAGGAGGCGTTCA 2252 28 100.0 32 ............................ TCAACTGGGGTGTGCAAGAGCACTACCCGAAA 2312 28 100.0 32 ............................ ATCGCCAGAGGCCGACACTGACACCAAATCGT 2372 28 100.0 32 ............................ TATGGCCGCGACGTTAACGGCGTGATTGAAAT 2432 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATGTTAGCCATAG 2492 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTGCTGATTGATCAGAATCATCAAGGTTTAGGTATTGCGAGTAAAGCAATGAATTTGTTACCAAGCTATGTTATTTCAAACTATCCAGGGTTTGAGCGGTTACAATTGACAGTAAATTATCGCAATAAAGCTGCGTACAATTTTTATCTTAAATGTGGTTTTGAAGATACAGGGAATTTGTATTTAGGTGGTCCAGTTGGTTCTCAACATATAATGCAGAGAACCGCCGCCTAACAAGGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGATTTTATTGGTTTTTAGTGCAATGCGGTGAGTTGGTCGTTGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTCCCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAGATCGAGTGAGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATAAGCACAAGGAGATATCATGCAAATCGAATGTCCATCCTGTAAAACAGATAATCATATTGATTATTCTGAAAATATTATTTGTGTCAATTGTAAGAAATCGTTTACTGGTCATGTATTTCAAAAGATTAAAAAGCCATTGGTTTCGTCAACAGCTGCTTTGTTCATTGGCATTTATGGTACATATAAAATAGACAACCATTTTTTTGATGAGCAAAGGCTTCCGATTCCGATTGAATATGAATTAATTGATAGTTGTGTTAATTCATCAAATGGAGTGTTGCGAGATTCAAAATATATCTTAAAGAAAAAAATATGCTCATGTGCACTTGAACAGACATTACTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9777-7466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOB010000012.1 Vibrio cholerae strain C18s.b Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9776 28 100.0 32 ............................ TGCGGTTACTTCTGTGTTTGATACGCTTTGAA 9716 28 100.0 32 ............................ TAAGCAAGAGTCGCAAAGCCACGATAAAATGC 9656 28 100.0 32 ............................ TGCGCCGATGGATATAAATGCTCTTTGGAACG 9596 28 100.0 32 ............................ AATACTGAAAAGTTAACGCGATAGTACGTTTT 9536 28 100.0 32 ............................ TTGATGAGTGGTTCATAGCTCATGGTTTCCCC 9476 28 100.0 32 ............................ AATTGATGTTCTCGATCGCTGCACGTCAGTTC 9416 28 100.0 32 ............................ GTTGATTAGTAACTGCTCAGAGCCACTGTTGC 9356 28 100.0 32 ............................ TCTCTATGGCTCCGATTCTCTCGCGGCCTTAA 9296 28 100.0 32 ............................ CTCAAGAATCGTGAAATAATCTTCCTTGCTCC 9236 28 100.0 32 ............................ ACAACAAGAAGAACGGTGGTTCTCTTCAAAAT 9176 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 9116 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 9056 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 8996 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 8936 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 8876 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 8816 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 8756 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 8695 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 8634 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 8574 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 8514 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 8454 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 8394 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 8334 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 8274 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 8214 28 100.0 32 ............................ TGCACATCGAAGGGGTGCGCGATGTCGATTTG 8154 28 100.0 32 ............................ GTGATAAACGTTCATTTCGCTTGGATAGGTCA 8094 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 8034 28 100.0 32 ............................ TTGCGAATACCTCGTTGATGGTGTAGATGCGG 7974 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 7914 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 7854 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 7794 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 7734 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 7674 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 7614 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 7553 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 7493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //