Array 1 675025-677305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079705.1 Mycoplasma synoviae strain FJ-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 675025 36 100.0 30 .................................... AAGCGTTAATTAACGCTTTTGACGAACATC 675091 36 100.0 30 .................................... ATGATAAAGCTTACGATTTTATTCACCAAA 675157 36 100.0 30 .................................... AACCTACAACTTTTTCATAAAATTCAACCA 675223 36 100.0 30 .................................... TTTTGTTTTGTGAAAGATTTAAATCTTTCT 675289 36 100.0 30 .................................... AATGAAAATTCTGAACTAAAAAGTGGTCTA 675355 36 100.0 30 .................................... TAGGAAGTCATAAATATAGAGACGTTTTAT 675421 36 100.0 30 .................................... TTTATAACTTTATTAGTTAACTATATTATA 675487 36 100.0 30 .................................... AAGAGGAGATATGGGACCACGGGGAGAGGA 675553 36 100.0 31 .................................... ATCATCAAGAGGAATTGACTTTAAAAACGGG 675620 36 100.0 30 .................................... ATAATTATAAATATTCTAAAGCGCTGGTTA 675686 36 100.0 30 .................................... ATAACTTGGTTGGTTTCTGCTACTTCTTGG 675752 36 100.0 30 .................................... AGTTATTCCAAATTTATCAATGACTAAAAT 675818 36 100.0 30 .................................... TAATTCCACTAAATTACCATAGCGCTTTCC 675884 36 100.0 30 .................................... TAATTCCACTAAATTACCATAGCGCTTTCC 675950 36 100.0 30 .................................... TAAATAGTTGATGAGGAAAAGTTAGCTTTG 676016 36 100.0 30 .................................... TTTAGAATACTGCCAAGGTAAGCTTAAAGA 676082 36 100.0 30 .................................... AAATTATGATACTTTAGAAAACTATCTTAT 676148 36 100.0 30 .................................... CTTGAGCCAAAGTCCTTAGTAAAGGAAGGA 676214 36 100.0 30 .................................... TTTATTATTAACTTTGTTAACTATATTATA 676280 36 100.0 30 .................................... AAGATTTATATAAAGACGTCGATCGATTTA 676346 36 100.0 30 .................................... TATTAAAAGAAAAAGTGCAAGTTTTTAGCT 676412 36 100.0 30 .................................... AAATCTGAATTTATTTGTTGAACTTCTGCA 676478 36 100.0 30 .................................... ACTAAATCGCTAGGTTTAATAATATAAACG 676544 36 100.0 30 .................................... ATAATTATAAATATTCTAAAGCGCTGGTTA 676610 36 100.0 30 .................................... AAATTAAAAACAAAACAAGAGCTAATATCT 676676 36 100.0 30 .................................... TTGATTATGAAAGTAAGTTTGGTGTCCCCT 676742 36 100.0 30 .................................... TAACTTTTTTAGAAAATAAAAACTGCACAA 676808 36 100.0 30 .................................... ACATTAGAAAGATTATTGAATAATATAGGT 676874 36 100.0 30 .................................... ATGAGAACGGTTATTATGGTGTTAATTCGC 676940 36 100.0 30 .................................... TTAAATAAACACCGTAAGTTTTTGCAAAAT 677006 36 100.0 30 .................................... ATTTCACCCCGAATTATTTTAACCTCCCTA 677072 36 91.7 30 .......AA.C......................... TCGAAGAATATTTTGACCGAATTTCCCATA 677138 36 100.0 30 .................................... TTAATTTTTTAGCAGCAAAATGTGGTGTTG 677204 36 100.0 30 .................................... TTTTGTTTGTTTCATGGCAAAATTATCAAA 677270 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Left flank : ATGAAAAATTAGTTTTAGAAATTAAAAATTTATTAAACAATAAAATAGGTTTTGAATTTGTATCTATTGAAGAAAATAATTCCAAATATTTAAAATATTTATTTAATTTAGAAAACGATAAATTTATTGATAATAAATCTTTAATAAAATGAATGGAAAATCAAAAATATAATAATCAAAAAATAAATTTAATTATTAAAAATTTTGATTTTGTTTTAATAAATGAATTAATTAAGTTTTCAAATAATTTTAATATTATTGTTTTAACTAATGATTTCTTTAAACATATAAATAATTTTGATTATATAGAAAGTGTTGCTCTTACAAATGAAGATCTAAATAGAATTGTTTCAATTGAAGAAAAAGATTCATTTGAATATTTTTTAGAAGAAATTTTTCAAGATTCTATAAGAAATATTGAAAAATTTGATTTTTTTTCACAAAACAATAAAGATTTAATAAAAAAATCATTAAAAATTAATTTTTTTTAATTAAATGCG # Right flank : CATTAGCCCCACAATTATTTTAATCTCCCTCATATTAGCACACTAATATCTTCATCTTTAAAAGCGGAAATAAAATGAATTAACAAAAAAATGGATAAAAGAAAAGCTGTTTCAATGAAAAAATAACAAATCCTGATGAGTATAAAATTATTGAACATGTAAATCCATTAGGGATCAATTTAAACTGAACTAAAAAATTAGAAAATAATAATTAAATTTATTTTTTTGTTGTATAATGTTATCGTATATATTACTTACTTAACAAAATAATTGTACGATTCCAAAATAAGGCGCTTATGTAAGATGCAATAATGCACTTATATAAGCTGCCGTAAACGCCGAGGTAACTCGGTTTTTTTTATACAAAAGTTATGGCAAAAAAAGTTGTTGAAATAAAAGAAACAGAATACTTATTTTTTCATTTAAATTCTTTAATTGTAAAAAAAGAAAACAACAAAATTGTTTTACCGTTGTCAGATATAGATACTATTTTAATTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 679650-681270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079705.1 Mycoplasma synoviae strain FJ-01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 679650 36 100.0 30 .................................... TAATACGTGTCTATAATAGAATATTCCATG 679716 36 100.0 30 .................................... AAATGACTAAGCAAAAAATATTTTGCGACT 679782 36 100.0 30 .................................... TTGGCATTATTAAATTTGACGAGTTAAAGG 679848 36 100.0 30 .................................... TAAATAGTTGATGAGGAAAAGTTAGCTTTG 679914 36 100.0 30 .................................... TTTAGAATACTGCCAAGGTAAGCTTAAAGA 679980 36 100.0 30 .................................... AAATTATGATACTTTAGAAAACTATCTTAT 680046 36 100.0 30 .................................... TAAACTCTTGACTTTGCCTAAGGTCTTTGT 680112 36 100.0 30 .................................... TTTATAACTTTATTAGTTAACTATATTATA 680178 36 100.0 30 .................................... AAGATTTATATAAAGACGTCGATCGATTTA 680244 36 100.0 30 .................................... CGTAGAAGCTGACGACTTTGATTTATATGA 680310 36 100.0 30 .................................... TTAAATAAACACCGTAAGTTTTTGCAAAAT 680376 36 100.0 30 .................................... ATTTCACCCCGAATTATTTTAACCTCCCTA 680442 36 91.7 30 .......AA.C......................... TCGAAGAATATTTTGACCGAATTTCCCATA 680508 36 100.0 30 .................................... TTAATTTTTTAGCAGCAAAATGTGGTGTTG 680574 36 100.0 30 .................................... TTTTGTTTGTTTCATGGCAAAATTATCAAA 680640 36 100.0 30 .................................... ATTTTTCTGATTTTATAACTGATTATTTAA 680706 36 91.7 30 .......AA.C......................... TTTTTTAATTTCTTAAATGCAGAATCTATG 680772 36 100.0 30 .................................... TTAAAATTAAAATATGGTGTTGTTGATGTT 680838 36 100.0 30 .................................... ATTAACGCGTCGCTAAATTTATAATTATTT 680904 36 100.0 30 .................................... GCTAACAACACCATATTTTAATGTCTTAAC 680970 36 100.0 31 .................................... TTTCTTTCAGTTCCAAACACTTGGATTGATG 681037 36 100.0 30 .................................... TCGAAGAATATTTTGACCGAATTTCCCATA 681103 36 100.0 30 .................................... CAATTAGCAATTTAGAAGAAGATTCGGATT 681169 36 100.0 30 .................................... ATTCATGTAGATTTACCAAATAGAGATATA 681235 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.3 30 GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Left flank : ATGAAAAATTAGTTTTAGAAATTAAAAATTTATTAAACAATAAAATAGGTTTTGAATTTGTATCTATTGAAGAAAATAATTCCAAATATTTAAAATATTTATTTAATTTAGAAAACGATAAATTTATTGATAATAAATCTTTAATAAAATGAATGGAAAATCAAAAATATAATAATCAAAAAATAAATTTAATTATTAAAAATTTTGATTTTGTTTTAATAAATGAATTAATTAAGTTTTCAAATAATTTTAATATTATTGTTTTAACTAATGATTTCTTTAAACATATAAATAATTTTGATTATATAGAAAGTGTTGCTCTTACAAATGAAGATCTAAATAGAATTGTTTCAATTGAAGAAAAAGATTCATTTGAATATTTTTTAGAAGAAATTTTTCAAGATTCTATAAGAAATATTGAAAAATTTGATTTTTTTTCACAAAACAATAAAGATTTAATAAAAAAATCATTAAAAATTAATTTTTTTTAATTAAATGCG # Right flank : CATTAGCCCCACAATTATTTTAATCTCCCTCATATTAGCACACTAATATCTTCATCTTTAAAAGCGGAAATAAAATGAATTAACAAAAAAATGGATAAAAGAAAAGCTGTTTCAATGAAAAAATAACAAATCCTGATGAGTATAAAATTATTGAACATGTAAATCCATTAGGGATCAATTTAAACTGAACTAAAAAATTAGAAAATAATAATTAAATTTATTTTTTTGTTGTATAATGTTATCGTATATATTACTTACTTAACAAAATAATTGTACGATTCCAAAATAAGGCGCTTATGTAAGATGCAATAATGCACTTATATAAGCTGCCGTAAACGCCGAGGTAACTCGGTTTTTTTTATACAAAAGTTATGGCAAAAAAAGTTGTTGAAATAAAAGAAACAGAATACTTATTTTTTCATTTAAATTCTTTAATTGTAAAAAAAGAAAACAACAAAATTGTTTTACCGTTGTCAGATATAGATACTATTTTAATTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGGGTTGTACAATTATTTTGTTAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //