Array 1 5310-5474 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSA01000304.1 Paenibacillus polymyxa TD94 STD94_contig00679, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 5310 32 100.0 34 ................................ ACAGTTAATCCAATTAATGATCTCAAGGTTATCT 5376 32 100.0 35 ................................ GCTGCAAGATTGATCACATCGGCTTTGTACTTAGC 5443 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 CATATCATTCACGCACTCACATGGAGTGCGAC # Left flank : AATTGGATTGCCGAAATAAAAGGTTTCACAGAGTTGATATGACTATTTCATTTCTCCATATTCTTACTATTAGTAAATGATATAGAGTTCCCAGGTAGAAACTCTGTTGAACCTTTTAATCAAACGAAAAATCCCCTGATTTTGATGTAATCAAGGGATACATAGGTTCATTTCTCTCGCTTTGATAATGCCAAATTGATTATTTCTCCACTCACAATTCCTGTCAGAATTGCATAGATTCCCATAGCACTCATCTGATATCCCAAAGCGTAAAATACCCCTATAACTATTGCGTAGTTCAATAGAATCGTTGCATAACGCTTTAGAAACTTACTAATGGAAATCCTCATAAGCAACTCCCACCTTATTTTATACTTCAACATAGTAAATGTTAGTTCATTATTGTATAAAAGTAAGGGGGAATTTGTCGAATAATCCTTTAAAAAGAAATTTGCACTTATTCACTGCTGGGCAGGCCACGAAATAAGACTTTCTTTTTT # Right flank : CAGCGAAAATACAGTAATTCATACCCTAATGATATCAATTCCACACATTCTCGCAAAAAACGATGCCAAAAAGGCTTGGATCAACCATTGCCCTTTTCTGAAGGCAACCGATTCAATTGCTTTTCAACATTTTTCGAGGTGCGAAGGACCCGGGATTTTTATGTGAGCTTCACATTCGCACCTTACAGAGTCAGCGGACTTTCCATATCGCAAGCTTCTTTGGCCCCTATATGATCCACTTTCTTTTTGTAGTTATCTTCTAAGTTGTAGAAGCGCAAGCTGTCTTCTGTTTTGTCTATCAACTCTTCGAGTTCGTACTTTAAACGTCGAATTGGGTAAAATCCGAAATACATTCACATAGGGATAAATAATCCTATCCTGTTTCATTGTGCCATGCCTTCATTACGATTTTTCCTTGTAACATCGTTCATCATGGCAGCCCCGTTTTCTTTTTTTGTAAAATCTTTTATTTAATCATTTTTCTTATTAATAAATGTAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATATCATTCACGCACTCACATGGAGTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 13168-12732 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSA01000304.1 Paenibacillus polymyxa TD94 STD94_contig00679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 13167 32 100.0 35 ................................ TGCAACTGCCGGACGTTTCTGTGATTGAAGAAACC 13100 32 100.0 36 ................................ TATGCAAATGGCAAGGCATCCCGCAGCACATTGCTT 13032 32 100.0 38 ................................ ACCAAGTCCGGCACCCTGTCAAGCACGTCGGCTATATC 12962 32 100.0 34 ................................ TACAAAAAGTGATAAATCTTTTTATGAGAAGATG 12896 32 100.0 35 ................................ TCAAGCCAGGTACGATTATTACCAAATCGTCCAAA 12829 32 100.0 34 ................................ CAGAACGGTGCGCTTGCGGTTTGTCTTCCCGGCA 12763 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTCCTGTTTTTGATTAACAAGAAAATGATTAGATAAAGGATTTTACAAAAAAAGAAAATGGGCTGTCATGATGAAACGATGATATAAGGAAAATCGTAATGAAGGCATGGTACAATGAAACAGGATAGGATTATGTATCTCTATTTGAATGTATTTTGGATTTGACCCAATTTAGACGTTTAAAGTATGAACTAGAAGAATTAATAGACGAAAGAGAAGTTAGCCTGCATTTCTACAATTTGGGTGATAGCTATAAAAAGAAGAAGAGCATATAGGGGCTAAGGAAGCTTCCAATATGGAAAGCTCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGTATAGAAAATGCTATCAGTGAGAAAAAGTCAATGGTTAATTTAAGCCTTTTAGACATTGCTTTTTTCGAAAATGCATGGAAATGATATCATTAGATAATCAATTACTGCATTCTCGCT # Right flank : ATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCCTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCCGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTACAATGCTCGCAATGGGCGCGATGAGAGGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGGCGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTCACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTAAGTGACCGCCCAGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTACCTTCCACACGAGAAATGAGCGTTCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19109-18592 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSA01000304.1 Paenibacillus polymyxa TD94 STD94_contig00679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 19108 33 100.0 37 ................................. GACCAAGTTGGCAGCATTAGCACTAATTGGACCCGGA 19038 33 100.0 34 ................................. ACTGTCGACGGCAGCCGGAATAATATTTTTAATC 18971 33 100.0 36 ................................. AATCCTGCTGCTCCCGGCGTAAAAGGGCAAAACTTG 18902 33 100.0 37 ................................. CATCACCCACTCTCTAATAGCATCGTCATAATTCAAG 18832 33 100.0 36 ................................. ATCAGCGTCGCAAAGAAGGTAAGACATGGATGCAGA 18763 33 97.0 37 .....................A........... GTAAAGAAAATGCTTCGTGCAGAAAATACACGCTATG 18693 32 87.9 37 .........CA.G..-................. AGGTAACAGAGATGAACCAGTATAGTGTACCGAAGGA 18624 33 97.0 0 ......................C.......... | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 97.7 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CACAATTTTTCTGTCTAGAAGAGTGTAGCCGATCCAAAGACTGGTCTATCAT # Right flank : TTGCTAGGACTTGAAGAATTAACAGTAGAAGCTAAAGTCGCACTCTATATGGGTGCGTGTTGGAGACGTAGTATATTTCATAAGGAGGTTTTGTATTAACTCCGGCGCATTATCGCTACTTTTTGGAGTAAGGAAGAAGACAATGACGCTTTTGTGGCAGGTGTTAAATCTCTTCTAATGAAAATCTCAGAACAATACAAACTAACGTATGGCGAAAAAACACAGCTGCTTGCTTCAATGATACTAGAGTACTCGAAATACGTAATAAGATGGGAACGTCACGGTACAATGGATGAAGAAGGAAAGTGGGAGTAATTGAGACAAATGCGGCTCTGGAGTTGAACGAGCTGGACTTGATAGAGGAGAGAATGAAAACTTCTGTATGGCTACATAATTATACTCAATTCACAGCCCTAGGACCTATTAGCACCGAAAAAAGTACCATTTTGCGTGGCTCTAAGGGGGAAGAGCGGTCACCTTAGAGCCAGTACATCCCGCCA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 434-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSA01000051.1 Paenibacillus polymyxa TD94 STD94_contig00196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 433 33 100.0 33 ................................. CAATCGACCTTTCATAGTTACGCTCATAGCACC 367 33 100.0 37 ................................. CAAAAATGAAATTACCACTCTTATAACCCATAAGGAG 297 33 100.0 34 ................................. ATGACTCAATCACTTTCAGGGAAAACAACGAGGC 230 33 100.0 38 ................................. AGCGAATCGGCAGTGATAACGGTCATCGGCAATATCCA 159 33 100.0 35 ................................. CACCCAGCCCGTGTGTAGCCGTGTACGGTGCCCAT 91 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 6 33 100.0 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGACATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTCCTGCATTTTCGCT # Right flank : TGAACCCTCTGCCAGAGTGGAAAGTGGATTGTCAACACTCTTCTAGACAATTTTTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 9826-9527 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASSA01000051.1 Paenibacillus polymyxa TD94 STD94_contig00196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9825 32 100.0 34 ................................ ATATGACATGCATGCATTGGTACACAGCAATAAG 9759 32 100.0 36 ................................ CGTAATTATGCGTAAGTATCTAGACCGCAATCCCAT 9691 32 100.0 34 ................................ CGATGACTATAAATGAAGCAGGTAAGATTAACGG 9625 32 100.0 35 ................................ TAATCTGAGCAACAGCATTTAAATCATTGTTTCTC 9558 32 84.4 0 A............C....AT..........G. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGGCAGCCGTTGGCTGATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCCTCTGATCATTCGCGTCACATTACTGGCGCACAAATTGTCATTGACGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATTCTCTGGGACAGAGAAATGTTTTGTGGTATCCTGAGTGTATTATCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGATCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTAGCATCGTTTTTTTCGGAAATGTATGGAATTGATATCATTAGGGTATTAATTCCTTCATTTTCGCT # Right flank : ATCTATAGTGATCCTAACCTTGCATAGCAACCCCGGCAGACTTTACATGATTGGAGCCTTTAAGATTATTAGTTTAGTTCTCTCTAAAAATACTATTTCCACATGACTTAAAATAATATTTATTTACATAACGAGAATAGATCTAATATGATTAGTAAGTAGAAGAGAATCTAGTATTTTAAGCGGAATACAAGTCTCTTACAATAACCACCTAAAAGCCATAAAATGAATATAGAGCTATGGATGTGAAACCGTAATCCTTGGATTAAGTAGATAAGAGAGGAGAGGAAGGAGAATTACTACAACGCTAGGAAATTATATTATTATTTATAAATTCACTTAACAACGTTAAATGTCCAAGTGGGAATTCTAGATGCTGTCGATATTGTATCTTATGACACGATTACACATTTTAAGTATTTGCTCAAAGGGGGAAAATAGATGAATTTATTATCTATTCCTGGTTTATATTTTTATATCTATCTAGGTATAGGCCTTAT # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //