Array 1 445-294 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFX01000455.1 Serratia marcescens strain C7 8373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 444 29 96.6 32 ............T................ CGCTCCATGCCAATATCACGCTCGCTTTTGGA 383 29 100.0 32 ............................. AGCAAAAGGTGAACCAAGATGACCTGTAAATA 322 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCGAACACATCTGGTATTGGACGCACGACG # Right flank : GACTCACTTGCAGATATTCTGCGTGATCATGAGTTCATTAACTCGATAAATTTATGATATTTATTTCATTCAAACGTATTGTCGCAACACTGAATTTTTCTAATGTTTTTCGTTGGCTAATAAGTTAAACCGTAAAGTTGTGACGCATATTAATAATGTTTCTGAGCGTTTGTAAGGGTTATTATCAGTTGAGCCATGGGGCAGTGTAGTGTGTAATGCCTTGTCCCTTGAATGATAGATATAGTCTTCATATTAATGTTTGATACTTGAAATGTTAATTTGTGATGAAGATAG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18863-19933 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFX01001294.1 Serratia marcescens strain C7 10051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 18863 29 100.0 32 ............................. GAAGAAAACCCACCGCTCAGGCGAAAGCGCAG 18924 29 100.0 32 ............................. CACATTCAGCATTTCAGTGATCGCCTTAAATC 18985 29 100.0 32 ............................. GCGAAGCCCCATCACCCCGCTGCCGACACAAC 19046 29 100.0 32 ............................. CGATAGGGCGCGACTTTCAGCTATTAGGGGAA 19107 29 100.0 33 ............................. TAGGCTCCGGATACCACGGCGCCGGCTGCGGCG 19169 29 100.0 32 ............................. CCTACAGCAGCATCCGCACAGACCAGCAGTGC 19230 29 100.0 33 ............................. AAATTTCCTCGGGCGCCAGCCTTGCGCCCTTTC 19292 29 100.0 34 ............................. CAATTACGTGATGCATTTGAGGCAGAGGCTGAGC 19355 29 100.0 32 ............................. GCGTGGCTTTCTACCTGCGCAACACTGGTGTG 19416 29 96.6 32 ............................C AGTCCGGGAGCAATGGCTGCCTGCCAGGTGCC 19477 29 100.0 32 ............................. CCCGACAGTTTGGCGGTGAGTTTCTACGGCTG 19538 29 100.0 32 ............................. GAGAATCCGAATCGCGGAGCAGCACAGATCGA 19599 29 100.0 32 ............................. CTGATACTGATCACGATGGTGCGCAAGGGGGA 19660 29 100.0 33 ............................. GTGATTTGAGGAGTGAGCAGTGAAGCGAGTTGC 19722 29 100.0 32 ............................. GCAGGGCGTGAGCAGGCCGCACAGGCAAACGC 19783 29 100.0 32 ............................. GAGGGACCGTTGGAACTGGAACCTGGGCTCGA 19844 29 100.0 32 ............................. TATCTGCGCAACGAAGGTTACGCCGTGGAATA 19905 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.6 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACTATCTGGCCGCTGCAGTCGATGCCGGGCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAGGTGTGGGGCGACGTGGCGATGCTGCTGGTGCTCGGTGTGGTTTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGTGTAGGGGATGTATTTCATTGTTTTAAAATAAGAATCCGGTGATTTAGTTTTATTGTAATGAGTGGTTTTTTTATTTCATAAATTTCAAATAGTTATATAGTCTTCCGGATGCTTAAATCGCGGTACAATTTCATAGGTGTAAAAAATATATTTAATTCAATTAGATATATTTAGA # Right flank : GATTGTTCCTGCTGGGTCTACGCCGGAGTCCACGTGTTCCCCACTGGGAATAAATTGACTAATCAGAATAAGTTGCTCTGGATACGGCTTACTTAGGTAAGTTTTAGCTGATTTTTTGTTAACCTTGTAATGATAAATGTAGGTTATTATCATGCTAATTATATTAAAGGATATATGCTTTGTTTAGTTTTACTTAAAATTCATATGGGATTTAAATTAATTCCGTTACGTTTTTATCTTACTGTTGTGAGCCTAATTGGATTTTTGTTTTTCATCATAATTTATGATTGCCTTTAATTTTGTTAAGATGCTAAAAATAAAAATAGCTATTGTTATCTAAACGGGATTGTTTATGGGAAGTGATATCCCTGACTATATGCGCTACTGGGGAAAAGCAAAAAGAGCTGACTTACCCGGAGAGAGTGACGATTACCACCTATTAGCTTATCACTGCCTGGATGTTGCTGCTTGCGGGTACCAGATGGTGATTGATAATCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28942-29888 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFX01001294.1 Serratia marcescens strain C7 10051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28942 29 100.0 32 ............................. ACAGTGGAGCAATTGGCGACTTCAGATATTCG 29003 29 100.0 32 ............................. GGTTTACAAAATTAACTGAACCTGGGTTGTTG 29064 29 100.0 32 ............................. TGATCAGGGCATTCGAATGGCTGGCACTTAAT 29125 29 100.0 32 ............................. CAACTACCCGATCAACACGGTGATTACGGGGT 29186 29 100.0 32 ............................. GAGCTGTCCGACAAATCCGGGCAATCGCTGAG 29247 29 100.0 32 ............................. CTTACGCCTTGAAAGAGTTCATTGGTGAGCAC 29308 29 100.0 32 ............................. GCACCTTGCCGATACGAACCAATCCGCGAGCA 29369 29 100.0 33 ............................. GTTGGCAGGTAAGAACAGACGCGTCAGGTATAC 29431 29 100.0 32 ............................. AACATTAGCGACTTGGCCGCGCGGGTTATACC 29492 29 100.0 32 ............................. CGCTGACGGCTCGAAAATCTGGTGGAATACAG 29553 29 100.0 32 ............................. ATCTACCTCGAAAGCCTGCCGCCGGCGCAGTG 29614 29 100.0 32 ............................. ACAACGGCAACTCATGGGAAGTCATGAGCCAT 29675 29 100.0 32 ............................. AGTCCATCGCCTCCACATTTGGCATATCTACC 29736 29 100.0 32 ............................. CCGCCGGTATTGTTCGGGATAATCCCCATCAT 29797 29 96.6 33 ...........G................. GAAACGAAGACGCGCTCTATTGCGTGGTTGAAC 29859 29 82.8 0 ...........G.............CGAT | C [29880] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCTGCGGGGGAAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGTCACAGGAGCCGTAACTGATGGGCATGCTGGTTGTCGTGACGGAAAACATCCCTCCCCGGCTGCGAGGCCGGTTGGCCGTGTGGCTATTGGAGGTTCGGGCGGGGGTGTATGTCGGTAATACCTCGCGTAAAGTTCGTGAAATGATCTGGCATCAGGTTACTGCCTTGGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCTATGAATAACGAGTCCGGTTTTGATTTTCAAACATGGGGAGAAAACCGACGTGAACCGGTAGATCTCGATGGGTTAAGGCTGGTCTCTTTCTTCCCTATTGAAAATCAGTAAGTTACCGATCTTTAAAAATATGGAAAAGTTGGTGGAATTTTAGAGGCTTAAAAACTCAAGTTATAACAATCAGTTAATCTTAGA # Right flank : TTTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTGAATACCGGCAGCATTTAAAAGTAAAACGCTCTCACATCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCAGCGTGGTCGGTCAGGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCGTCGATTTGCGCCAGCGTCTCGGCGCCCTGCGGCGACAGCCGCACGATGTCCACCAGCCCCTGCATGCTCGGCAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGCGAACGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCACGGTTCTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGGTGGCCGTAACTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 33295-34299 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFX01001294.1 Serratia marcescens strain C7 10051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33295 29 100.0 32 ............................. TGCGGCCTTTGCCGGAAGCTGTTATCGACGGC 33356 29 100.0 32 ............................. CACGCGCACGTCCTCCCGGCGCAGTTGTTCGT 33417 29 100.0 32 ............................. CGGAGCGTTTCGGCTGGGAGTCGGCGCTGACG 33478 29 100.0 32 ............................. TACTCGCCCGCATCAGAGACTATTTTCGTAGC 33539 29 100.0 32 ............................. TTATGGCGATGAAGTCCGCAAAGAGTATGGGC 33600 29 100.0 32 ............................. GCCGACATGCATCAGATATTTTTCCATGCCGC 33661 29 100.0 32 ............................. CCAACAACATCAACGCCGCCACTGCGATCGCG 33722 29 100.0 32 ............................. CAGGTCGATGAGCTGAACGCCTCTTTCCAAAA 33783 29 96.6 32 ............G................ TACGCCTGGCGGAACGGCTGGAGATTAATGCC 33844 29 100.0 32 ............................. TTCCCCGACAGCGTGAAGAAGGCTCTGGAAGA 33905 29 100.0 32 ............................. TTGGCTTTGTTCTCCACAAACAGCGTTACGGC 33966 29 100.0 32 ............................. CTCTGGTGATGGACGATGCGCAGCGCTATCCG 34027 29 100.0 32 ............................. CCGGTAGATTAATCGCCCCTCTGCTGATGGGA 34088 29 100.0 32 ............................. GTTCGGGCAGAGTACAAACGGTTAGAATGTCG 34149 29 100.0 32 ............................. GCTGGCGAAGAGCTAGGCCCGAAGCTGTATCC 34210 29 93.1 32 ...........GT................ GATATTCGCATGATAGATGTAACCTATCGGCC 34271 29 79.3 0 C..........G..........GG...AA | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : CGCCGCGTTCAGCCCGGTGGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGATGAAAGCCTGCGCCGTCAGGGGCTGGCTGAAAAGCTGGTGTACGAGGGGTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGTGAGCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGCAAAGGATTTCACCGAAGTGTGTTTCAAAATTTTTATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : ATTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGGAAATATCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCTTACCGCTTTACCCCTTTTTTCCTGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //