Array 1 8251-7613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKI01000074.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N48686 N48686_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8250 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 8189 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 8128 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 8067 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 8006 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 7945 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 7884 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 7823 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 7762 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 7701 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 7640 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6240-7856 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKI01000087.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N48686 N48686_contig_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6240 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 6301 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 6363 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 6424 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 6485 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 6546 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 6607 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 6668 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 6729 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 6790 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 6851 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 6912 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 6973 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 7034 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 7095 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 7156 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 7217 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 7278 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 7339 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 7400 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 7461 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 7522 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 7583 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 7644 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 7705 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 7766 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 7827 29 93.1 0 A...........T................ | A [7853] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //