Array 1 96038-95337 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJF01000012.1 Escherichia coli strain EC_30 NODE_12_length_104327_cov_19.778647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96037 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 95976 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 95915 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 95854 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 95793 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 95732 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 95671 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 95610 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 95549 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 95487 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 95426 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 95365 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86345-87959 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHJF01000015.1 Escherichia coli strain EC_30 NODE_15_length_94705_cov_20.646257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86345 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 86406 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 86467 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 86528 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 86589 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 86650 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 86711 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 86772 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 86833 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 86894 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 86955 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 87016 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 87077 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 87138 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 87199 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 87260 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 87321 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 87382 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 87443 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 87504 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 87565 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 87626 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 87687 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 87748 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 87809 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 87870 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 87931 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //