Array 1 45384-45953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIF010000005.1 Escherichia coli strain PBIO868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45384 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 45444 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 45504 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 45564 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 45624 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 45684 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 45744 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 45804 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 45864 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 45924 28 85.7 0 ....................A...C.CT | T,C [45944,45948] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55010-56298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIF010000005.1 Escherichia coli strain PBIO868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55010 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 55070 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 55130 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 55190 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 55250 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 55311 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 55371 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 55431 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 55491 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 55551 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 55611 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 55671 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 55731 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 55791 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 55851 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 55911 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 55971 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 56031 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 56091 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 56151 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 56211 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 56271 27 92.9 0 .......................-C... | T [56291] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //