Array 1 99385-95814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXM010000071.1 Yersinia kristensenii isolate IP38487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99384 28 100.0 32 ............................ CGAGTGAGGGAATAAAGCCCCTCAAGGGCAGG 99324 28 100.0 32 ............................ GTATCCAGCGTGAAGCCAAGCAGAAAGAAGAT 99264 28 96.4 32 .C.......................... ATGATGTGCGTACGCCGGTCTATTTCGTCATG 99204 28 100.0 32 ............................ TCGTAGTGGCAACCCAGATGACAAATATCAGA 99144 28 100.0 32 ............................ TGCCAGTTGTCCCAACCATCAGCCGACCATTA 99084 28 100.0 32 ............................ TGCTTTGCCAAGAACAATTCCAGCCCGAAGCC 99024 28 100.0 32 ............................ TTCTGCTACCTGGTACAGCAGATAGTGAGCGC 98964 28 100.0 32 ............................ TTGGTGTGTTTGATATCGATGGCAGCTACTGC 98904 28 100.0 32 ............................ AAGGGGACCGGGTATTTATTGGTGTCGTGGGC 98844 28 100.0 33 ............................ CCACTCTCCGGCTGCGGGGAGTACGCTAAAAAA 98783 28 100.0 32 ............................ AGCGCATCGGGGGTTGAGCCGCCATACAGTAG 98723 28 100.0 32 ............................ ATTCAGCCGCCGCTCTCGATAAACAGCAAACA 98663 28 100.0 32 ............................ TTTCGTTTAACATCAAAATCACTCGGACTTTG 98603 28 100.0 32 ............................ GCCCACAGCTAACGCAAGCGTCTCCCGCGTCA 98543 28 100.0 32 ............................ GCTCTTATAAGCAAAGGTTTAGATATCAATCT 98483 28 100.0 32 ............................ GGTTAGGCCCGTACATATTTGCCAGTACAGAT 98423 28 100.0 32 ............................ ACGAGCCATAGCGAGCGGCCAATACCGTGTTA 98363 28 100.0 32 ............................ AATCCCTCGAACATGTCACCACCAGGCGAGTT 98303 28 100.0 32 ............................ TATGCCTGCAATCTCATTCGACGATGTACTCA 98243 28 100.0 32 ............................ ATATCGGGGATGGATTTCAGCCAGGAAGAAAC 98183 28 100.0 32 ............................ AATTCAAGAAAGACATCAACACGACGGATATT 98123 28 100.0 32 ............................ AGCAGGTTCACCGCCAGCGGCCCGTGAGGAAG 98063 28 100.0 32 ............................ AACGGCCGCAGACTCAAACTCAATCGAACTGC 98003 28 100.0 32 ............................ TTAGTGTGTTTGATATCGATGGCGGCTACTGT 97943 28 100.0 32 ............................ TTTCGGCTTGGTCATCTTTTTGTTTCTGCTTA 97883 28 100.0 32 ............................ CATGCAGTTCTAAAATTCTTAATGGCCCTCCA 97823 28 100.0 32 ............................ TTCTAAACCACCGTCACCACCCAACAAAGCTC 97763 28 100.0 32 ............................ GTGGTCGGCATAGCCTCAGCAAGTTCGGCGTT 97703 28 100.0 32 ............................ CTCAATGCAAAAAAGAAGCACTCAACGTATTT 97643 28 100.0 32 ............................ TTAGTGTGTTTGATATCGATGGCGGCTACTGT 97583 28 100.0 32 ............................ AATAGATATCAAAAATCTCGGATAGGTTAAGT 97523 28 100.0 32 ............................ AATGATATGACCGGGCAGCGGAATGGCCCCAT 97463 28 100.0 32 ............................ GCATAGAGTGTGGTGATTGACGCCCACCAAAT 97403 28 100.0 32 ............................ AGAAATGATGCTTAGTGATTTACAGCGTTGGT 97343 28 96.4 32 ...........C................ AGCGGAGGGCAGTGAGATAGCCAAGTTCATGG 97283 28 96.4 33 ...........C................ CGTCTTACTTTAGGTTTCTTCTCTCATCAACAA 97222 28 96.4 32 ...........C................ AACACATACATCGCCGACATGACCGAGTTGGA 97162 28 96.4 32 ...........C................ ACTTGATAGCGCCAGACTGTTGAGCGATATGC 97102 28 96.4 32 ...........C................ ATTACAGGCGGCGCATTATCCGGGCCGCTAAC 97042 28 96.4 32 ...........C................ AAGATAATGATCAACCTCCAGTGGGGTTAAAC 96982 28 96.4 32 ...........C................ TGAAACTCATTGTCTTTGTCGATAATGATTGA 96922 28 96.4 32 ...........C................ AATGAGTACGTTATTCGGAAATGACAATGATT 96862 28 96.4 32 ...........C................ TGATAGCGAAAATCGGGCAGGTTCGTTTCGAT 96802 28 96.4 32 ...........C................ TTTTAGCGTGGTTTCCTGCGCGTTGGCCCAGA 96742 28 96.4 32 ...........C................ AAATACGACACTCTCTAACTGTGAGTTAAATA 96682 28 96.4 32 ...........C................ AGCCCGAGCCAAATTTGTCGCTGTACTGTGCC 96622 28 96.4 32 ...........C................ GCTGGGCGGCAATACTTCCCACGGTGTGATTA 96562 28 96.4 32 ...........C................ TGTGAATGCACTGTGGCGGCGCAATAAAAACG 96502 28 96.4 32 ...........C................ TGATGGAAAAGCTTCAGTCACTGAAAGAAAAA 96442 28 96.4 32 ...........C................ AGCGTATCAAATGCCATTACCCGCTGATAACC 96382 28 96.4 32 ...........C................ ATCAACACCCCCCCAACTATCATCCGAATGAA 96322 28 96.4 32 ...........C................ GCTGGGCGGCAATACTTCCCACGGTGTGATTA 96262 28 96.4 32 ...........C................ TGTGAATGCACTGTGGCGGCGCAATAAAAACG 96202 28 96.4 32 ...........C................ ACGAAAGTAAAGTTGAGATATCGAGCAGGCAG 96142 28 96.4 32 ...........C................ TAATCCAATTCCATATAATGCAGATTTAATCC 96082 28 96.4 32 ...........C................ GAAGATATCTACCCTACTCAATCCGAATGCTT 96022 28 96.4 32 ...........C................ TAAACAATCCCAAGGCCCACAGTAATCTAATC 95962 28 96.4 32 ...........C................ ACGTCATATGGCCGCTGCTTTTGCACGGCTAT 95902 28 92.9 32 ...........C..C............. GGCATATGTCCAGCGGCGAAGCTGGTCACACG 95842 28 96.4 0 ...........C................ | T [95819] ========== ====== ====== ====== ============================ ================================= ================== 60 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGATTCAATATCGGGTCGTGCGCCGTGTGCAGGTGAAAAGTAATGTGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCTGATAATCGCGAGCAGCAGTGTAATTTGCCTTTTTTGCGCTTAAAAAGCGTATCCAGCGCGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGGAAACTCCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTACCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCGTGTTTCATTACT # Right flank : TCTATCCGACTTCTTATTTCTCCTTTCTCGCTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 109446-108275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXM010000071.1 Yersinia kristensenii isolate IP38487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109445 28 100.0 32 ............................ TGCAATATCTGGCGCATATGCAATAGTTTCAT 109385 28 100.0 32 ............................ TCGTAGTAGCGGAGGTGTGACGCTGCCCCCCT 109325 28 100.0 33 ............................ AGATATAAAAATGGAAGAACCAGAAACCAAAAC 109264 28 100.0 32 ............................ AGATTATCGAGAAGATGCGCGAAAAGGGATTT 109204 28 100.0 32 ............................ TTTGAATTCTCTGTTCGCGAGACAATGACAAG 109144 28 100.0 32 ............................ ATCATTCGTTCTGCATCCTGTCGGCTCATGCC 109084 28 100.0 32 ............................ TGGCTGTGGAAGTTCAGCGATGTTGACGACGG 109024 28 100.0 32 ............................ AGTACGGTATATGTCGACCTGAACCGTGAAAT 108964 28 100.0 32 ............................ AGTCAGCCAATCATAGTGGATGTGAAAAAAGT 108904 28 100.0 32 ............................ AGATCCGAACGGTGGTTTCCCCTAGTTCAGCT 108844 28 100.0 32 ............................ AATATCACGGCGAGTGCCTTTGATTGGGCCAA 108784 28 100.0 32 ............................ GCCAACACAGAGAACCAGCTCCGTACAAAAAC 108724 28 100.0 32 ............................ TGAAAGACAAGGATGAGCGCAAGCAAGGTCAT 108664 28 100.0 32 ............................ GACAAAAAGTCCAAGTGTGGATCAAGGGCGAA 108604 28 100.0 32 ............................ GATGATGATTCAAGCCAAGCCCTCCAGTATCT 108544 28 100.0 32 ............................ CAACAAAGAAACAAGCAGATCGCGGAAAATAT 108484 28 96.4 32 ...T........................ AACAGCAAGTACAGTAACAGGCCGTTCTAAAT 108424 28 96.4 32 ...T........................ AATATTCCGGCCCTCAGTCCGTTAGCGAGGCA 108364 28 96.4 32 ...T........................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 108304 28 85.7 0 ...........T.........A....TT | AC [108278] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAATTCCAGTATGCCATTGAGTATGCCATTAATGATTAGGTAGGGTTGTTTTCATTTGTACTGGATTGAGGTGGTTTTTATATAACCTTTTGTTTTATAGTTTAAAATTGAAATGTATTGTTCCGCATTAGAAATGTTTTTAGCGGACTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAATTTTATCGGTCATATTTATTCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAACCCCCAAGATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTAAAACT # Right flank : GAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGGCGCGCTCACTGACTGGCAAGATACAATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //