Array 1 44301-42681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLJ01000018.1 Streptococcus agalactiae strain USS-107 ctg7180000002149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44300 36 100.0 30 .................................... ACTACACCATTGTTAACTAAATCTGCCATG 44234 36 100.0 30 .................................... TTTAGTCTATCTCCTAAAGATTTCCTTAAT 44168 36 100.0 30 .................................... ATCATAGCCGTTATAATCTTCGTACGAGTT 44102 36 100.0 30 .................................... TAATTCGTCTATCGGAACGAGTGGAGTGGT 44036 36 100.0 30 .................................... AAGAACTGAAACTCTTACTATTAAACTATT 43970 36 100.0 30 .................................... ACATGCCACCTTACTGTATGGTATATCGCT 43904 36 100.0 30 .................................... TCCGATGTTAGCAAGTGAAGAATTCGAACG 43838 36 100.0 30 .................................... CCCTATGTTTGATAATATTTTAGATATTGG 43772 36 100.0 30 .................................... ATGCTTGTCAAAGGTAATAAATCTGGAGAT 43706 36 100.0 30 .................................... CAATCCAATTGTCACTTTTAATGGTGCTGT 43640 36 100.0 30 .................................... ATACTACAATCCTTCATACTATTCTTCTTT 43574 36 100.0 30 .................................... GAGGTTGTTTCGGCTCTCATGCAACGTAGC 43508 36 100.0 30 .................................... ATAGTAAATCAAATTAATTAGTACAATATC 43442 36 100.0 30 .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 43376 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43310 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43244 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43178 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43112 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 43046 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 42980 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 42914 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 42848 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42782 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //