Array 1 259019-259413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBBB010000008.1 Chromobacterium violaceum strain WCH4 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259019 29 96.6 32 ............T................ AGGGCAATCTCCCCATGCAATGGGTGCTGGAC 259080 29 96.6 32 ............T................ TCGGTCGCGCCATCGGTGATCACGCCCTTGAT 259141 29 100.0 32 ............................. AGTCCACCACACAGTAGAGCAGTTTCCAACAA 259202 29 100.0 32 ............................. ACGCTGCGCGGACGTTCTGCGCCTATCACTCA 259263 29 100.0 32 ............................. TCTACAACCCACAGAATGGCCAATGGCAGGAT 259324 29 100.0 32 ............................. CCCTTGAAGGCGGCACCGCGCCCTGGCAAAAA 259385 29 75.9 0 ............GTT..........GTGA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACTGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGCCGGCCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGGCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTTGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCGGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGCTTGAAAATGGT # Right flank : ACGGGGGATGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCACGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGACGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266685-267261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBBB010000008.1 Chromobacterium violaceum strain WCH4 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266685 29 100.0 32 ............................. ACGTGGCCGCCATGAGCGCGGCGTTCTTTGAT 266746 29 96.6 32 ............................C ATTGCATTTCGGATGCTGCGCAACCAACCGCA 266807 29 100.0 32 ............................. CCCCGGCCAGATATGATCCCGCATTGAGCAAT 266868 29 100.0 32 ............................. ACGCGCTGGAAGTCTGGAACCGCAGCCGACGC 266929 29 100.0 32 ............................. TTCGCCACGTTCCAGTTCCTGGAGTCCGACGA 266990 29 100.0 32 ............................. GTCCGCCTTCTTGTCCAGCGCCACGCCCAGCT 267051 29 89.7 32 ...........GCC............... CGTTGATCATTGGCCGATTTGAACTCTTCGAA 267112 29 89.7 31 ...........GCC............... CAGCAGATCATCGCCAGCCGCTCGTTTTCAC 267172 29 89.7 32 ...........GCC............... TAAGTCGCCGTCAACTTGCCGTTGTCGTCGCG 267233 29 72.4 0 ...........GCC......A...TG.TC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTTACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCCCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTGCCGGTCATGGCGCGGCGGTTTCCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTTGGGTGGTTTTTTATCTTTAAAAATCAGCATCTTGAAATTGGT # Right flank : CCTGCCCGTCTATCGCTTGCTTAATCCGCGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTCGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGTCTGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //