Array 1 663-2282 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZWD01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate B288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 663 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 729 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 795 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 861 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 927 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 993 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1059 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1125 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1191 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1257 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1323 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1389 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1455 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1521 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1587 36 97.2 30 .......T............................ AAATTATACCAATGGCGAAAATCTCGGGCG 1653 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1719 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1785 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1851 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 1917 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 1983 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 2049 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 2115 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 2181 36 100.0 30 .................................... TGAGCATTCCGACTGCCTGCAACAGTGTGT 2247 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //