Array 1 71639-71283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629830.1 Prevotellamassilia timonensis strain Marseille-P2831T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 71638 26 96.2 43 ..................G....... AAGGTATACCCTACTATACTAAATAATATCTTTAGTGGTCGCA 71569 26 100.0 40 .......................... ATGTGTATGAAAGTAAAGTTTTCGCTACCTTTTTGTCGCG 71503 26 96.2 40 ...........C.............. GGCAACAACCGCAATGGTCTGCAAGATGCCGAGAGTCGCA 71437 26 100.0 40 .......................... CAACATGATTACAATGCAAGGAACGACCCAAAACGTCGCA 71371 25 96.2 38 ........-................. TACGACAGCAAACGACGCCAAGCAGCAGCTGACGTTGC 71308 26 96.2 0 ...C...................... | ========== ====== ====== ====== ========================== =========================================== ================== 6 26 97.5 40 CCCTGTGTGGGTGCGTGGATTGAAAC # Left flank : ATGGTTTGTTTGCCAGGATCATTGGCAAAATTAGTGCACTTACCATTCTGCAATACGTAAACTTCATTAACGACAAGCCCATTGGCAGAATTAAGTATGCACTAAATTAATTCCGCCAACAGGTATACGGAAATAAAATACTACCTTTGCACGCGTGTCGC # Right flank : CAGCAGAATGTGGAAAATAAAAAGGGTAAACGAACATGGAAAGTTCGTTTACCCTTTGCTAAATCATTGATTATTGGTAATTAAAGTTTTCTGCCCTCTGTTTTTCGGAGGGGATTTTGTTCTATTTTAGTCAGCCGGTTCGAGGCAGGCGTCGAGCAAGGTTTCGATGGCTTCGCGGTCCATGTTCTGGCCAATGAATACGAGCTTTTGCATACGGTCGCCGTAGGTATCGTCCCAGTCGTTCATGACCGAGGGGTTCTGTGCCTTAAACTGCTCAAACTCCTCGGCAGGCATGGTGGCATACCATTGTCCGGCCTGGCTGAGCGACACTTGCTTGCCAGCCTGCTCAAATACATAACACATGTCGCGCTCTGTGCCAAAGTAGCAAATGCCCTTGCAACGAATCACACTCTTGGGCCACAGACGCGCTATGAGCTGGTCGAACTCTACCATGTTGAAGGGACGGCGACGCTTGTATACAAAGGTGCCAATGCCGTATT # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGTGTGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCTGTGTGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 298636-301853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629842.1 Prevotellamassilia timonensis strain Marseille-P2831T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 298636 33 100.0 35 ................................. CTATTCCATTGCGCCAAATTCCACTCATTTTGTTG 298704 33 100.0 34 ................................. TGTATAGAATTTTTATAGTCCATAACTTTATATT 298771 33 100.0 33 ................................. TAGACCATGGCGTATATTTACCTCGCATTTCCG 298837 33 97.0 35 ................................A TCGGTTAATTGTCTTGCAATGTATGACGAGCTAAA 298905 33 97.0 33 ................................C AAAAGTCGAAATCATGGTTAAAGGTCCAGTTAT 298971 33 97.0 33 ................................C TTTTGTTCCTTTTTATCTTTGTACTTGGTCTTG 299037 33 100.0 33 ................................. ACAAAATCCGAGATAGGAGTATTTGCAGACAAA 299103 33 97.0 34 ................................A TGCAAGTTGCCTTGATAATATCCTTTTTGATGCG 299170 33 100.0 33 ................................. GCACAATAAAGGTAACGAAAAGAGTATTTTTTG 299236 33 97.0 33 ................................A CTCCAGTGTCTATTATGATGTCCTCGTTTCTAA 299302 33 100.0 34 ................................. GAAAATGCAGTTAAATCACTTTCTATTATTTCTG 299369 33 97.0 34 ................................G TATATGTCGGGCTCTGCATGTATTTCACCATTAT 299436 33 100.0 34 ................................. CGGATTTTGCCTTACCCGAATATGATAAACTCGG 299503 33 100.0 33 ................................. CGCATGATGGCAACCCGTAAGTTGTTGCAATAT 299569 33 97.0 32 ................................C GAAAAAAAACTGCAAGCTCTTGACCCCAGTGA 299634 33 97.0 34 ................................C AAAAACTTTTGTTTAGCTTGAGCAGCACGCAAAG 299701 33 100.0 33 ................................. GTCCTTACCGCCAAAGTCAAAGCCCTCACCGCT 299767 33 97.0 34 ........................T........ TAGTACCCTCTGTTGTACCTAATCGTTGGCACAT 299834 33 100.0 35 ................................. TAAAATCGCTTGATTTTGTAGCCCTCCCAAATTGG 299902 33 97.0 34 ................................A AGTTTACGCTCAGAAATAACGAAATCAATATCAC 299969 33 97.0 32 ................................A GCGGGCAAACCACATTTTACAAGTTCCGCAAC 300034 33 97.0 34 ................................A TCTTCATGCGCCGAACTATCGTACGGGCGTCTAC 300101 33 100.0 34 ................................. TTGCCTTCTCTGCTATTGCTTTATCCTTAGCCAC 300168 33 97.0 34 ................................G AGTTCGTTTTGGACCGACAATAAATCCAAACCGC 300235 33 100.0 32 ................................. GCTTTTAATGTAAAATTATCTGTTGACATTTT 300300 33 100.0 34 ................................. TTGTCATAGGACTTGGCAAGCCGTTCAGCCTTAC 300367 33 97.0 32 ................................A GCTGCGACAACTGCAAAGGCTGGTGTGATGAC 300432 33 97.0 34 ................................A TTTAATGCGTACCTTTGTGGTATAAAATAAAGGC 300499 33 100.0 32 ................................. CGCTTTTCGGTTGCTTTAATCTCTTTTGCGGT 300564 33 97.0 34 ................................C TTTATATCTTCTTTATTAGAATAATGCTTTATAT 300631 33 97.0 33 ................................C CATTCATCATCAAGGTAAGCTTTCTCCTCCTCC 300697 33 97.0 33 ................................A TGGGTGCGTCAGTGGGACGGACAGACTACCGAA 300763 33 97.0 33 ................................A CTGCACAGAAAACACACCTAAAGCGTGCCAACC 300829 33 97.0 34 ................................A ATATGTTAGAGAGGAATTTGGCAGTAATGATTAC 300896 33 100.0 33 ................................. GGCAGCGCACATACTGCCCAGAAATCAGCATGG 300962 33 97.0 33 ................................C GATAGTACCTTTGTGTTTTCCTCTAAAGTGGTG 301028 33 97.0 33 ................................A GACTTCGGTTAATGGCACAACTAAGAACTACAT 301094 33 97.0 33 ................................A CGAACCCCAAGAAAGGCAAGAATATTTGCACAT 301160 33 97.0 32 ................................C ACAACATCTTTTTTAAGGTAGCACTTGCTTAC 301225 33 100.0 33 ................................. GCTTTACAATCGTACTACAATATTCAACCGCTA 301291 33 97.0 32 ................................G AGCACACTGCCGAACTCCCAACTATCCATTAA 301356 33 97.0 35 ................................C TTGCGTGATAGGGTCCGCCGAAAGAACAAGTCTAA 301424 33 100.0 33 ................................. TAATAAACGCTTTCAACTTCACCGTTAAAGAAT 301490 33 97.0 33 ................................A CCCGTCAACTATTGTGTCGGCATACACTGCCTC 301556 33 93.9 33 ..............................C.C CCCGATGTCGAAACTTTGGCCGCCTCGATGATT 301622 33 100.0 33 ................................. TATTGTTCATCTCGCTTACTTGACCTTACCAAA 301688 33 97.0 34 ................................A TTAACGAGGTCATTTTGTGCCTTTACACCTTCAG 301755 33 100.0 33 ................................. GCAATATCTTGGCTATTACAAAAGCACTCGTAA 301821 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 49 33 98.1 33 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Left flank : TATCCTGTATTTTTAATAAATTAGTTTGCTTATGTTTGTACTGATAACTTACGATGTGAATATAACGTCACCGAATGGTGCAAAGCGTTTGAGAAGGGTTTCAAAAGTTTGTCTGGATTATGGGAAAAGGGTTCAGAATTCGGTGTTTGAATGTGTGTTGACCGAAACTCAGTTCGTTCTTCTTAAAAATCAGTTGAAAGGTCTTATTGAAGAAGAGCAAGATAGTGTGAGATTTTATCTTTTGGGGAATAACTGGAAACGTAGAATAGAAACGATTGGTAAGAATTTTGGACTTGATTTTACTGGTGAATTGATCATATAGAGCAATGAGAGTGCGAACCTCGAGTGCTGCATAAAAACATGGGAGGTTCGCAGTTGTTGTTTCTCAATATTTTATATTCATTTTTTTTGTCTCGCATTTATTATATCAATATTTTTTGACTAACTTCGCGAAATGCTTACCTTATTAAGTTGATATTCAGACATTTGCTGAATATACA # Right flank : GAGATACGGAAACCTGTTGGCGGAATTATGGGTTGACGGGTAAGTATGCGATACACTTTATTATGTTAAAGTATGAATGGTAAGAAGGCAAACTTACCTGTCAACCTGTACACTTGTCAACTTGTTTACTAAATCCGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //