Array 1 317530-318621 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000001.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 317530 30 100.0 36 .............................. CCCCCTAAGACGACGTTCGCGGATAAAATCCTCCCC 317596 30 100.0 36 .............................. TCGGATCGTTTCGGGTCCCATCCCAGCCGTGCGCGG 317662 30 100.0 37 .............................. GAAACGAGAAGTCGTCCCCGATCGCGTCGTTGCGTGG 317729 30 100.0 36 .............................. CTCGGCACCTCAATGAGCGCCAGCCCTTCCTCGCCA 317795 30 100.0 36 .............................. TTGAGCGGCTTGTCTTGTCGGCCGCCGGGGCCACCT 317861 30 100.0 37 .............................. TTGAGCTGCACTGCGCCTTGCGTGGGGCCCGGATTGG 317928 30 100.0 37 .............................. GAAACGCATCGGGCAAGGCCGCCTCGTTGACTACAGA 317995 30 100.0 37 .............................. TGTTTGCTGTATGTGTGGATGCGATCAGAGGATACAT 318062 30 100.0 36 .............................. CAAAAGAGGATGCGGAGGTCAACGACCACGCCAAAG 318128 30 100.0 36 .............................. CGCCTCCACCACCCACCCATGCAGGTCCACCAGGCG 318194 30 100.0 36 .............................. CGCCTCCACCACCCACCCATGCAGGTCCACCAGGCG 318260 30 100.0 38 .............................. CCTCCGCTGTCTTCGTCGCCGAGCAGGTCCGCGATCTG 318328 30 100.0 37 .............................. TCGCCATCGAGGTCGAGGAAGCCCCCGCCCCCGGCAT 318395 30 100.0 35 .............................. TGCACGGTGCATGTGATCTGCTTCGTGTCGCTCAT 318460 30 90.0 36 .T........T..........T........ TGTCCTGCTTCATCGCCCACGCACGGAGGTTGATGT 318526 30 90.0 36 .T..............C....T........ TGGTGCGTGCGTACTTCAATGCGCTCGCCAATATCG 318592 30 83.3 0 .T...................T..A.T..C | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 97.8 36 CCTTTAATCGCACCTTTGAGGCATTGAAAT # Left flank : GCCGTGCACACGCGTATGCCTTCATAAAAAAACTCAAGTTGCAGGGTATGATACAACACCAACACATGTTGTCATTCTGAGGAGCGAAGCGACGAAGAATCTCTCCCAATGAGAGCAAAGCAGGTGCGATGAGGAGATTCTTCGACTCCCCCGATGGCTGGAATACGCTCAAAATGACAGCCTTGTAGGTGACCACTTGAATCAAGTGCTAAATGCAGAGGACCCGACGCACACGCCACGAAAACGAGTGCGCCTGCAGCGCCGCTGAAGGCCGATCTGTCGTCGGCCTCCGCCCATTTTCGGGAAAACGCCTGCCGCAACCACTGTGCCACATCCTAATTTTTATGGATACGCAGCGTAGGATCAAGGAGTTAGCGAATGTCGTCGGACCCCCGGGGGTTTACACGCTACCGGAGGGTGACGACATCGGGCGCGCTCAATCATCGCCAAATCGCCGCTTATTTGCATCTAAGTGGGCTGAATTGCATATTCCATCAGGC # Right flank : CGTCCCAGGGCACTGGGACGCCGTCATGGAGCTCTCTTCGCATGCAGACAAGGAGCATAAGGTTGAGATCGCGCTACTTTTGCATGGCAGATGCCGCTCCGCAAGGGCAACGCATTGCTCCGGGCGACGCAGAGCCCTGCGTCGTTACGGCAGGTTGGGGGGGCGCATCTGGGTCGCCCGCGGCTCCGCTCAGGACAGGCGCACCTTTGAGGCATACGTAACGTCCCAGGGCACTGGGACGCCGTCATGGGGCTCTCTTCGCATGCAGAGACGGGGAGCATGAGGTTGAGATCGCGCTGCTTTGCATGGCAGATGCCGCTCTGCATGGCAACGCATTGCTCTGGGCGACGCAGGCCCTGCGTCGTTACGGCTGGTTGGAGGGGTGCTTCTGGGTCGCCTGCGGCTTTGCTCGGGACAGGCGCACCGTTGAGGCATAGTACCGTCCCCAGGGCCCCGAGACGCCGTCGTAGATCCGCCTTCGCATGCAGACGGGAGCATGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATCGCACCTTTGAGGCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 2 330657-331220 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000001.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 330657 30 100.0 36 .............................. TATCCCTCTGGGGCCTCCGGCGCATCAAAGCGCAAC 330723 30 100.0 36 .............................. CATCGACCGTCAGGCGCGTTTCGAGGGCGTTGTTGA 330789 30 100.0 37 .............................. AGCCGCCTGAAGACGACGAAGCCGACAGCTTCAACGA 330856 30 100.0 37 .............................. CAGGTGGTCGATGCGATGATCTGCGCTTGGTCGTGTA 330923 30 100.0 38 .............................. GATACTACGCCAAGCCTTCCAGCGAGCCGAATCCGCCG 330991 30 100.0 37 .............................. CCGGTACCGTGACCGTTTGGCGGACGGGCTCAGTGCC 331058 30 100.0 37 .............................. CCGGATCGCCCCTTCCCAGGCCGTGCCGGAGAGATCG 331125 30 100.0 36 .............................. CTGTCTCCAGATCTATGGTTAGCAATGATCTGGCAA 331191 30 90.0 0 ........................A.T..C | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 37 CCTTTAATCGCACCTTTGAGGCATTGAAAT # Left flank : TGTACGACGTGAACGTAGACCGCGTCGCCAAGATGCTGAAGCTGTTTCGGCGCTACCTAACCTGGGTGCAGAACTCGGTGTTCGAGGGCGAGCTCACGAAGGCGCAGTACGCCCAACTTAAGCAGGAGGCCGAGGCGCTCATGGACCCCGCCGAAGATTCAGTCATCGTCTGGCACGTACGGGCCGAGTCGTACTTCGAGCGCGAAACGCTGGGCGAGGAGCCGGGCGAAACGGGACGCTTTCTGTGACCCCGCCTGCAGCGCCGCTGAAGGCCGATCTGTCGTCGGCCTCCGCCCATTTTCGGCAAAACGCCTGGTGCAACCACTGTGCCACATCCTAATTTTTATGGATACAAAGCGTAAGATCAAGGAGTTAGAAGATGTCGTCGGACCCCCGGGGGGTTGCACGCTACCGGAGGGTGACGACATCGGGCGCGCCCAATCATCGCCAAATCGCGGCTCATTTGCATCTAAGCGGGCTGAATTGCATATTCCAACAGG # Right flank : CGTCCCAGGGCACTGGGACGCCGTTGGGGGGCCGCCTTCGCATGCGTGACGGGATCATGAGGGTGAGATCGCGCTCCTTCGCATGGCAGGCCGCTCCGCACAGCAACGCATTGCTCCGGGCGACGCAGAGCCCTGCGTCGTTACGGCAGGTTGGGAGGGCGCGCTCTTTGGAGGGGGCTCGGCTCCGCTCGGGACAGGCGCACCGTTAAGGCATAGTAACGTCCCAGGGTACTGGGACGCCGTCATGGGGCTCTCTTCGCATGCAGACGGGGAGCATGAGGTTGGGGTCGCGCTACTTTGCATGGTAGATGCCGCTCGGCATGGCAACGTATCGCTCTCCGCGACGCAGGCCCTGCGTCGTTACAGTAGGTTGGAGGGACGCATCTCGGTCAGCCTTGGCATCGCTCGGGACGGGTGCACCGTTGGTATACGTACCATCCCAGCGCGGTGGGGCGCTGTTGCAGCATGTCGTGTCCTAATCAACGATAGTCGGGGCGGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATCGCACCTTTGAGGCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 616809-615590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000001.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 616808 30 100.0 37 .............................. TTCTTCGCGCTCGAACACCACCGCGAAGCTGTGCATC 616741 30 100.0 36 .............................. CCAAAGGCAAAGGCCGCGCCCTCGATGGCATCGCCG 616675 30 100.0 36 .............................. TGTGATGGGGAGCCGCGCTTCATTCCACGGGAAAAG 616609 30 100.0 35 .............................. TCGTTTCTTCGACGGTGGCAGACAGCGTGCTGCCG 616544 30 100.0 37 .............................. CCCGACGTGGAGCACGCCATTCGCATTATGGATGCGA 616477 30 100.0 36 .............................. CGATTTTGAAGAAGGGGTGGCTGTTCTGGCGCAGGT 616411 30 100.0 37 .............................. TACATCGCTTCGCATCTTTCAGAGCCATGCTTATGAG 616344 30 100.0 36 .............................. CCGCATCCTCGAAAAAGAGTGCGATAAGACGGCAGC 616278 30 100.0 36 .............................. TACTGGTTCTCAAGGCGACGCCCTACATCGCCCCCG 616212 30 100.0 37 .............................. TATCAAACCTTATCGTTGATGAGGCCAGAGGGCTTCG 616145 30 100.0 36 .............................. CACGGTCACGTAGTCGTATATGGCCTGCTCTGCGTG 616079 30 100.0 37 .............................. TGGTGTCGGTGATGATCTGGTAGGCGGTCTTCGCCTG 616012 30 100.0 36 .............................. TCTACAACCGCGTCGCTTCGGAAACCGGCATCGACC 615946 30 100.0 36 .............................. TTCTTGTCATTGTCGTCGAGGGTGTCGTCGTTGCTG 615880 30 100.0 35 .............................. GAGGAACGTGGAGACGGGGCCGGCCGCCCATACAA 615815 30 100.0 36 .............................. ATTTTGGGGCTGGCGTACGACCGCACCGAGTTTGTG 615749 30 96.7 34 .....................C........ AAGCCAAAGTGCGCACGCGCTGGCAGGCCGATTA 615685 30 96.7 36 .....................C........ CAGGACTACGACGCCGAGGTGGGTCGCGAAATCGCC 615619 30 83.3 0 .....................CG.G.T..C | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.8 36 CCTTTAATCGCACCTTTGAGGTATTGAAAT # Left flank : TACCCAGCTTATGGCTTCAGAACCCGGACGCAATGACCCCTGCCCGTGTGGAAGCGGGCGCAAGTACAAGAACTGCTGCCGCAACTCCGATGCCTGGTACCAGAGTAGCACCGTGCAGGGCATCATCGTGGGCGTGGTGCTTCTGCTGAGCATACTGGTCATCGGCGGATTGCTCACCAGCGGCGGCGGAGCCGTCGATTGCCCGCCCGGCGAGGTGTGGTCCGAAGCCCACGGCCACTGTCACTAACGCCCCCCGTTCAGCGCCGCTGAAGGCCGATCTGTCGTCGGCCTCCGCCCATTTTCGGGAAAACGCCGCCCGCAACCACTGTGCCACATCCTAATTTTTATGGATACACAGCGTAGAATCAAGGAGTTAGCGGATGTCGTCGGACCCCGGGGGGTTATGCACGACCGGAGGGTGACGACATTGGGCGCGCCCAATCATCGCCGAATCGCGGCTTATTTGCATCTAAGCGGGCTACATGGCATATTCCAACAGT # Right flank : GTCCCAGGGCACTGGGACGCCGTTGGAGGGCCGCCTCCGCATGCAGACGGGGCGCATGAGATTGAGATCGCGCTGCTTTGCGTGGGCAGATGCCGCACCGTATGGTAACGCATTGCTTCGGGCGACGCAGGCCCTGCGTCGTTACGGCAGGTTGGAGGGGCGTCTCTGGCTCGCCCTCGGCTCCGCTCGGGGCAGGTGCACCCTTGAGTATACGTACCATCCCAGAGCGGTGGGACGCCGTCGTAGAGCTCTCTTCGCATGCAGACAGGGAGCATGAGACTGGGATCGCGCTGCCTCACATGGCGGATGTTGCTCGCATGGTAACGCATTGCTCCGGGCGACGCAGGCCCTGCGTCGTTACGGCAGGTTGGAGGGGCGTCTCTGGCTCGCCCTCGGCTCCGCTCGGGGCAGGCGCACCATTGAGGTATACGTACCATCCCAGAGCGGTGGGACGCCGTCGTAGAGCTCTCTTCGCATGCAGACAGGGAGCATGAGGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATCGCACCTTTGAGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 41669-40909 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000012.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 41668 37 100.0 35 ..................................... GCAACCCTTGTCTCTGCCATCACGGGCGGCGGCCT 41596 37 100.0 38 ..................................... AGAGGGAGTGAGTTGTTGTATGGTCGGGCTCCGTCTCC 41521 37 100.0 36 ..................................... CTCTTGCCCCTCCGTCTCCATCGTGGCCCGCTCGTA 41448 37 100.0 36 ..................................... ATTGTCTGGGTCGCTTGCCCAAAGCGACTCGAGACG 41375 37 100.0 36 ..................................... AGCGCGTGGATGACAGCCCTATGACGCAAACGCTTA 41302 37 100.0 33 ..................................... AAGCATGTCCTCGTCGGTGTACGCGGCGCTCGT 41232 37 100.0 35 ..................................... GTAGACAGCCAGCACGACCCCGTCCCCGACGCCCT 41160 37 100.0 35 ..................................... CGATGTACGCATACCGCGAAGGCACGCACTGGTAC 41088 37 97.3 34 .........................A........... GCCTTATGGCCACTCAGCACGTCGTGCAGCTCGT 41017 37 97.3 35 .........................A........... GTCGAGCAGATACAGCACGAGGCCAGCGAGACGGA 40945 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.5 35 ATAGCACCCTCCTTCACGGGAGGGTGAGGATTGAAAG # Left flank : TCCATGTCGGCTGCCGAGGCGGTGGAGACGTATGGTGTTGATGAGTCGATTGATTTCAATGATCCGCTTATTTTATAAGCGACCGTTGTAGTGCTATGTCAATCCCCACTTTGATAGTTGCCTTGCAATCAGCCCCCACGAAGCCTGTCATGGTGAGCGCAGTCCCGCCCTGTGGCGCCGACCGCTGTCGGCGGAACCATCTCCTTGGCGTTTAGCGGGAACGGTTCGGGACGGCACAGCACGCGTAGCGTTCTCGGCTTGACCTAAACAACCATGCGTGACACAACAGTAGCTGTATGATGTGGTGCGTTTGAGGCATCGCGAACCGGTAGTGGTCGCCGATCTGCACGGGGGATCGCGATTGTATGTAAAGCATTGATATTAAACGATATGGAGGAAGAAAGACAGATTGCGGATTCGGGACGAGTTGACACGACAGGAAGGGTTCGCGAAAACGACTCTGAAACCTGCTGGTTTTCCATCAGGTTACAAGGACTGCG # Right flank : AAGACGGTGGAGCGGGCATACCAGTGTCTCGACAACATAGCACCTGCCTTCGGGCAGTATCTGTTTAGCCCTCTCGTCGCATGGCTCCGCCGTGCGACGCAGGCTGCTCAGGGGCTCTGCCCCGTTCCAACTTGGGCTAAACACTGCCCAGGACGTCTGCTGAGTTCCCAGTCGTGGGCTACAGGTCGCTAAACAGATACCACGGGCAGGTGAGGATTGAAAGATCCACGCAACCAGGTGTGTCTTCTGTGCCCAGATAACGCGGTGTGCAAGTTTTTCCATTGTCCTTCCGGGGCGAGCATCCCCCTTTGTCGCTGCGCGACATGTACGCCGCTTCGTGAAGGGGGAAAGGCCCGAACAGCGTGAGGGAATGGGGGATGTCAGGACCGTGTATTCTGCTACAAGGCGACCAGCAAAGGGAAAAGAGGTAGTGGGTAGACGCTAAGTGATAAGGCTATCGTAGAATGTAGGTTTGTCTTATTCGAACCCCCTCTCCCTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGCACCCTCCTTCACGGGAGGGTGAGGATTGAAAG # Alternate repeat : ATAGCACCCTCCTTCACGGGAGGGTAAGGATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 50249-51302 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000012.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 50249 37 100.0 34 ..................................... ATGGACGTCATGTCTTCACGCAAGGTGTTCACGA 50320 37 100.0 34 ..................................... GGAAGTGCAGGCTCGCGCCCCGCAGGTCTTTTCC 50391 37 100.0 36 ..................................... GCAATTTTGCAAACTCAACCCCGAAGTCCAGATGAG 50464 37 100.0 35 ..................................... ATTTCGTGGCGATCGACCATCCGGCCCAGGCGGCG 50536 37 100.0 34 ..................................... GACAGCCATGATGGGTGTGCGTTTGTGTGCGTAG 50607 37 100.0 37 ..................................... GTATTGCTCATAAGCCTCAGTGCTAACCGTTAGCACA 50681 37 100.0 37 ..................................... ACGGCCTTCACCTGGAAGTCCCGCGTGCGCGTCTCAT 50755 37 100.0 37 ..................................... ACGTAGCTCTGCACGGCCTCCGGGTCAGCGCCGTCAA 50829 37 100.0 35 ..................................... ATCCACGATCGCGCTGCTCGCACTCCAGGCGGTCG 50901 37 100.0 35 ..................................... GACGTGAGCACTGAGCGACACGCTGTCGCCTTCGG 50973 37 100.0 35 ..................................... GAACTCGTCGGTGTAGAGCGTCCATGTGAGTGGAT 51045 37 100.0 35 ..................................... ACCGATGACGCGATTGAGCGCTTCGCCGAGCTTGC 51117 37 100.0 40 ..................................... ACGGTCGACCAGGTGGCGGCGCTCAGTGCCACGCTGATTG 51194 37 100.0 35 ..................................... CTGCTACGTGCTCAGCTGGAGCGATGACGACCTGG 51266 37 75.7 0 ........C.................CTTC..TTTT. | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.4 36 ATAGCACCTGCCTTCACGGGCAGGTGAGGATTGAAAG # Left flank : CTCATCGGCGAGAAACCGCTGCACACGAGGATGCGCCTTGCCTGCGTCGTGCCACCAGCCCAGCCAGCGGGCTATCGCGGCGCTGTCGAACGGCGCGGCAAAGTCCGCCGCCCGCTCGGCGACGTTGCGGGCATGGTCGTGGAGCAGCTGTGGCTGACCGCCCGACTCCGGAGCCGAATGGGCGATGAGAGGCGCAGACATAACGATTTAATACAGGAAGTTGAGAGAAGTAACATTAGAGTACAAGGCATACAGCGAAGATGCAAATGCTGCGAACATGCAGCCGGTGTTTCGGTTTACTTATGTGACACAGAAGCATCGCGAACCCCAAGTGGTTGCTCATTCCCTGGGGGGTTCGCGATCTGCACTAAGCCGTTTAGAACCAGCATGATACAGATACCCGCTTTGCGTTACCTATATCGCATCCGGTCTGGGGAAACAGGGGTCCGCGAAAACGGCTTTGAAACCTACTGGTTTTACATCAGGTTACAGCAACCGCG # Right flank : GGGTAGCGGTTCAATGGTAAGTGATTGTCATATGGCCGACATCATCGGAGCCAGACAACCCCCTCTGTCTATCGACATCTCCCCCTTGGAAAAGGGGGAGAAACCCAAACGAGTCCGCAGGACGACTCATGGAGCGCAGCGGAATAAAGGGAGAGGGGGTTCGAATAAGACAAACCTACATTCTACGATAGCCTTATCACTTAGCGTCTACCCACTACCCTTTTTTGGTATCAGGGCAGCACGTCCCGCATCAAGCCCCCGCAAAGCAGGACCGAACCCCGCCGGTCGGGATATGATGGTGTGCGGTATCCTCATGTGCACGCTCCCCACCGTTATGCTGTCGTCTGTTCGCACGCGTCTGCTCCTCCCACTGGCCATGCTGACCCTGCTGCTCAGCGGCTGTCTGCCGTCGGGGTGTAGCAGCGGATCGTTCGATGCGATTGCCCCCTCCGATTCGCTCTCGCGTGAGCGCGCCGCCACGGTGGCGGCTGATTCGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGCACCTGCCTTCACGGGCAGGTGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.30,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 111365-110869 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEP01000007.1 Longimonas halophila strain KCTC 42399 Longimonas_halophila_contig_00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 111364 30 100.0 36 .............................. GTGCGGCTGGGTGCTATATGCGACCACGACACCCGT 111298 30 100.0 36 .............................. AGCTTACGAAGGTGGTGGTCGGCGTCGACCCAGCCA 111232 30 100.0 36 .............................. CCGCGTGGTGACAGCTGCGGTGGTGTACGACGGATG 111166 30 100.0 37 .............................. AAAAATGACTACGATCACTTCCAGGTGGAGGACGTGA 111099 30 100.0 37 .............................. AAGCCTTCGTAGAGGGCGGGCGCACGTGGGTCACGAC 111032 30 100.0 36 .............................. CCCTCGAAGTCGAGCTATCCGAGCAGCAATTCTACG 110966 30 100.0 37 .............................. GCGAAGCTGCGTTCGTTTTGCGCAATACTTTTGTCGG 110899 30 86.7 0 .....................T..A.T..C | C [110873] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 37 CCTTTAATCGCACCTTTGAGGCATTGAAAT # Left flank : CCGGCCTGCGCATCCAACTGAACCAACGCCTGGTCGATTTGAGCACGGCGGTCGCCCAGGTTGGCTCCTACGCCAAGGTAGGCATCGGTCCAGGCAGCAGGGGGAGGCATGAAAACTTGAGCGTATCTAAAAAGTAGGTCTATGGCGTGTACAAACTATTCTGCAGAGGGTTGGGGAGGCACTGTTTAAAAACGATCCACGGACCGCCTACAGGTCCTAAAACCGCAGTGGAACACCCCAAACAAGGACCCCGCCCACAGCGCCGCTGAGGGCCGATGTGTCGTCGGCCTACGTCCATTTTCGGGAAAACGCTCTCCACAACCACCGTGCCACATCCTAATTTTTATGGATATGCAGCGTAGGATCAAAGAGTTAGCGGATGTCGTCGGCCCCCCTGGGGGTTGCACACTACCGGAGGGTGACGACATCGGGCGCGCCCAATCATCGCCGAATCGCGGCTTATTTGCATCTAAGCGGGCTAAACTGCATATTCCAGCAGG # Right flank : GTCCCAGGGCACTGGGACGCTGTTAGAGAGCCGCCCTCGCATGCGGACGGGGCACATGAGGTTGAGATCGCGCTGCTTTGCATGGGCAGATGCCGCTCCGCATGGCACCGCATCGCTCCCGGCGACGCAGTGCCCTGCGTCGTTACGGTCGGTTGGAGGGCGCTTCTGGGGCGTCCGTGGCTTCGCTCGGGACAGGCGCACCTTTGAGGCATAGTAACGTCCCAGGGCACTGGGACGCCGTTGTAGAGCCGCCTCTCATCCTGAGTGAGGCGCAGCCGAATCGAAGGATCGCACTGGGACGCCGTCGTAGAGCCTCCTCCGCATGCAGACGGGGGGCATGAGGTTGAGATCGCGCTACTTTGCATGGCAGATGCCGGACCGTATGGTAACGGATTGCTCCGGGCGACGCAGGCCCTGCGTCGTTACGGTCGGTTGGAGGAGCGCTTCTGGGTCGTCCGCGGCTTCGCTTGGGACAGATACACCGTGCAGGCATCCGGGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATCGCACCTTTGAGGCATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //