Array 1 194016-202809 **** Predicted by CRISPRDetect 2.4 *** >NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 194016 30 100.0 35 .............................. ACCGCTGGAAATCTAGATGCCGCGAAAAACGTCCT 194081 30 100.0 37 .............................. GAAAACACATGGGGGTATAAATCATGGTTATAACTCA 194148 30 100.0 36 .............................. TCCCTTTCCAATAGGGATTCTTTCCAAATATCCAAA 194214 30 100.0 37 .............................. GAAAACACATGGGGGTATAAATCATGGTTATAACTCA 194281 30 100.0 36 .............................. TCCCTTTCCAATAGGGATTCTTTCCAAATATCCAAA 194347 30 100.0 38 .............................. TCCAACTCCACCATTTCGAGTTACGCTCACAGACGGTG 194415 30 100.0 36 .............................. CTTCGCATGCTTCATTTAAGATGTTGTTTAAATCTT 194481 30 100.0 37 .............................. TAATGGCGCTCGATTTGCTGAACAGCAGGTATTTCAA 194548 30 100.0 36 .............................. TTGTGGTTGTGAGTTGACAAATCCCGACTTTGAAAA 194614 30 100.0 36 .............................. ATGCGTATAAGCAGCGGGAAGATCTTCAGGATTTGC 194680 30 100.0 41 .............................. GCGACGAAGATGGCGAAGAGAGGAAGGCCAAGAAAAGAAAT 194751 30 100.0 36 .............................. ATCCTGCAGTGAGTTTCCTGTTTTTACGTTATCATC 194817 30 100.0 37 .............................. CACCATTCAGCGTTATGTTTGCCGTTAAAATAGTGCT 194884 30 100.0 36 .............................. ACTTCTGTTGCAAATTTTTCCAACACGCCTTCCCAT 194950 30 100.0 37 .............................. TGTGTTGCGTTGTGAGGAACACAATAGATCTTCCCAT 195017 30 100.0 37 .............................. AAGCTTACGCTATATCTTACAAACTTCAAAAACTCGT 195084 30 100.0 36 .............................. AATATCGTTTGAATAGGGAATATGTCTTTCTTCGCA 195150 30 100.0 36 .............................. AAATAGTTCTCTCGGCTATTGTTTCGTCAGGAGGTT 195216 30 100.0 35 .............................. AAGAAGAAACTCACGGTTTTCACATCGGTTTTTCA 195281 30 100.0 37 .............................. TTTCGTCTGCAAGGTAAGAAACTTCAATCGCGGTTAT 195348 30 100.0 36 .............................. CTTGAAAAAAGAGGGTACAAGGTTACAAAGGCCGAG 195414 30 100.0 36 .............................. TGCATCGGTATTCCTCCTTTCAAGAAGCGAGAGAGT 195480 30 100.0 36 .............................. GCAAGGATTTTGGGATGATTTAATGTCCTGGTTAAA 195546 30 100.0 36 .............................. GTATTTAGCAAACACATTATATTCAGTTCCATTATG 195612 30 100.0 37 .............................. TTGTTGAAGAGATTGAAGAAATGATGGATCAAATTTG 195679 30 100.0 36 .............................. GTTACACTCTCAAAGTCATAAATATTATTTATTCGA 195745 30 100.0 36 .............................. CAGAAATACTGTTTCTCATACAGAAATTTATGCTCA 195811 30 100.0 37 .............................. CATTAATCACACGGATTAAAAATATTGCATATACAAT 195878 30 100.0 39 .............................. GACTCAAATTACAGAGAGTCAGAAGCTTGATGCAACAAT 195947 30 100.0 38 .............................. ATTGTAATTGGTAGTATATCTGAAGCATCGGCACGGCT 196015 30 100.0 37 .............................. CGGGTGCAGTACAGGGATTTGAAGGAGATTTGCTCCT 196082 30 100.0 37 .............................. CTAATACACTCTATGGAACTACAACCAGTATATACAA 196149 30 100.0 36 .............................. TCTGGTCAAAAGGAACTCCATACTCTGACTGGGCAA 196215 30 100.0 37 .............................. CGACGCCTCTCAGATTTGGGAGGATACTGTTGCTGGT 196282 30 100.0 37 .............................. AATGAACACAATACCATCCCTCAACTTTTTCAAATCT 196349 30 100.0 36 .............................. TGAGCCTGGACTTGGCTCAAAGTTTCAAGCGCAGTT 196415 30 100.0 37 .............................. TTGCCATATGGAGTCGATATCTTGATCATTTGACCAT 196482 30 100.0 36 .............................. CCGCACAAAGAAGGAATTATTGAACTTGCCGTACCA 196548 30 100.0 36 .............................. ACCTTTAGTTTTATTGGAATATTATCTAAATATGTT 196614 30 100.0 37 .............................. TCCACTCCAAACAGGCTGCGGACTTACTTAAAGATAG 196681 30 100.0 36 .............................. TTCAAAAGGCACTTTCTCGGCATCGATACCGATGCT 196747 30 100.0 38 .............................. TCGCGCTATCATCAGTGTTTTTTCTGGTATCCGTACTA 196815 30 100.0 36 .............................. TATTATTAATACTATAACCTCTGTTATGAATACCTC 196881 30 100.0 36 .............................. TTAGCATTATTGCTATAATGTTTTCTATTTGGGGCA 196947 30 100.0 36 .............................. ACCATACCACTTGCCAGTACCAGAAAGCGAACCAAA 197013 30 100.0 36 .............................. GTAGTGCCGAAGAGTTGAATTGGAATACTAACACTT 197079 30 100.0 37 .............................. CATAAGAAAACCCATACTTATTCACAAGATATTCACA 197146 30 100.0 36 .............................. CTATGCAATCTCTGATAAGCTTTATCATTCTCCTCA 197212 30 100.0 37 .............................. TTTTTGCAGCAGCTGCAGCAATACAGGGTGCGCGCGG 197279 30 100.0 36 .............................. CTCTGCCGATCGGATTGCTGCTGGCTCTTTGTCTGT 197345 30 100.0 36 .............................. CCTTACTGCCAAAGGTACGCCTATTATGATTCCAAG 197411 30 100.0 37 .............................. ACCATTGTACTACTAAGTGACCTCACAACAAAATCAT 197478 30 100.0 35 .............................. TTGGTACGACTCAGAAAGAAGCTTAGAAAATTCGC 197543 30 100.0 36 .............................. TTCAAGCATCACAAATTGGAAACTACGGAAGTAAGC 197609 30 100.0 36 .............................. CGTAGTTGCCTTTTTCTGTTTTGACGATCTGCGCGT 197675 30 100.0 38 .............................. AAGAAGATAAAAGAAACAGCAGAAAATGCAGAAGAAGT 197743 30 100.0 36 .............................. GTATTTGCCGCTTGATCTCTCCAAAAACCTTCTCTT 197809 30 100.0 36 .............................. GACGGTTGCTCTCTCACAAGAGCAAATCGCAGAAAT 197875 30 100.0 36 .............................. AGGTTGCCTTCAATGTAATTGTCTGCACGTTTTCTG 197941 30 100.0 37 .............................. CCATAAAAGATTCTGTCGGTAATGTATATGAACAGAT 198008 30 100.0 37 .............................. AAGTTGAGAAGGGAGCGTTAGTTGAGGTACCAATTTA 198075 30 100.0 36 .............................. TCCCAACAAATTGCTTACACTCAAAAGTGTTTTGAA 198141 30 100.0 37 .............................. CATTTAGCTCAGCTGGTGTTAGCTTAAGCATTTCTAA 198208 30 100.0 36 .............................. CAAAGAGGTACTTTTAAGTTGGTAGCGAAGAAGTAT 198274 30 100.0 37 .............................. AATCTAGGCAAAAGTTTTAAAAGAAATCCCAACCACA 198341 30 100.0 36 .............................. CTTTTCCAAATGCGAAACTTATCTTACTTGGAGATT 198407 30 100.0 36 .............................. ATTTCCCCTTGTCGCTTGGTTTTGCGACGCGGTACT 198473 30 100.0 36 .............................. TATATCGTCTCTTACATTTGTTGTCCAGTATGCTTT 198539 30 100.0 37 .............................. TGAACACGATGAAAATAATAATCCTACACAATATTTA 198606 30 100.0 36 .............................. TGCAAAATTCAGTTGCGCCAGATAAAGGCACACGTA 198672 30 100.0 36 .............................. AATTAAGGCTAATGCAAGCCAAAGCTTCCTGCTTTT 198738 30 100.0 37 .............................. CCAAACAGATTGGTTTAATGTTTCAACAATGTTTGAT 198805 30 100.0 36 .............................. GAAGTTGAGTATTATAAAAGAAAGTTAGAAAAGAGG 198871 30 100.0 35 .............................. TATGAGCAAAACAACAACGACAGCACCAAGGACAA 198936 30 100.0 37 .............................. CCATTTGGAAGAGGAGGTGTAATGAACGAATTGAGAT 199003 30 100.0 36 .............................. TCTATACCTATTCGAGTAACAAAGGAGGTATGAATA 199069 30 100.0 36 .............................. TCTATACCTATTCGAGTAACAAAGGAGGTATGAATA 199135 30 100.0 36 .............................. AATAAAACTAAAGGAGGTTAATATGAAAGAAATATA 199201 30 100.0 36 .............................. TAGTAATTTCATTCTCAATGAATAAAAAGGAGGTGA 199267 30 100.0 36 .............................. AGAGTCTACGAGTGGGTATGCAAAAACTATTCCAGT 199333 30 100.0 37 .............................. AAAGCAACATGTTACCATTGCAGGGAACCACATTATA 199400 30 100.0 36 .............................. TAAAAAATCGGTAGCGGGGATAGTTTTCATTCCTCA 199466 30 100.0 36 .............................. AAGTTTTGTGCTGATTATTGATTGATGTACTAACCT 199532 30 100.0 36 .............................. AGGAAAGACTTGCGATAGTAGAGGGAATATTGACTC 199598 30 100.0 37 .............................. TTGCATACGCAGAAACATATTTCGGATACAACTTATA 199665 30 100.0 36 .............................. ACTATCGAAGTTTCTAGGTAAACTTTTTATGAACCA 199731 30 100.0 36 .............................. TCGCTTTTTCTTTCTCCACACTTTCTTAAATAGGAC 199797 30 100.0 35 .............................. GTATTCACACTATTCATTTTATCACCTTCATGAAG 199862 30 100.0 35 .............................. GTATTCACACTATTCATTTTATCACCTTCATGAAG 199927 30 100.0 36 .............................. GAAAGCAAGCGGCACTAAAAGCCATAGCCGAAGCCA 199993 30 100.0 36 .............................. TCTGTTCCAAAAACATTATTCATAGTTCAAGCAATT 200059 30 100.0 37 .............................. TTAACGCAGTATATGAAGCTATTGCAAGAAAAAGAGA 200126 30 100.0 37 .............................. GCAGGCATAAGCACCTGCCCTTCGGTCTTTGAAAAGT 200193 30 100.0 36 .............................. TATAGTTATAGGAAAAATTGGCGAAGAAAATTACAT 200259 30 100.0 38 .............................. CACAAACAAGCATGACGGCGGTATATGAGTATGACCCA 200327 30 100.0 36 .............................. CGATACTCTCAAAACCACCGAGTATCTGGAAGAATT 200393 30 100.0 38 .............................. CAGGCAATGCTGACGTTATACGGTATCTACTCAGGCGC 200461 30 100.0 35 .............................. TGGTATTCGTGAGATGATAGTTTCTGTTTTGGGTA 200526 30 100.0 37 .............................. CCAAACAGATTGGTTTAATGTTTCAACAATGTTTGAT 200593 30 100.0 36 .............................. GAAGTTGAGTATTATAAAAGAAAGTTAGAAAAGAGG 200659 30 100.0 37 .............................. TACATCTATTGGATCGTTGTTGATAGCTGGAATATAA 200726 30 100.0 35 .............................. TCGGGTATCACGATCCGGTCGGGATCAGAATCCGA 200791 30 100.0 36 .............................. GAAAGATCACCGCAAATGGAAGGATCATTGACGTCG 200857 30 100.0 37 .............................. ATGCACGTGGCTTGATGCAGATATCCCAACCAGCGCT 200924 30 100.0 36 .............................. ACACCACCTCAAAAGTTACTCCAAGATTAATTTATT 200990 30 100.0 36 .............................. ATTTGAAGGTGAAAACATGAAATTCGATTTAAACAT 201056 30 100.0 36 .............................. AATTCACGATAACGGATGATCCTGAAATTCTGCAGT 201122 30 100.0 36 .............................. AGAAATTGTGAACATAGGCTCGCACAAAAAAAGGGG 201188 30 100.0 37 .............................. CTTTTGAGCATCCTTACTGCTAAAGGTACCCCTATTA 201255 30 100.0 36 .............................. TACCATTATCCAGAGATTCCGGGATTTTAAAAAATA 201321 30 100.0 36 .............................. TTAGCACTGTTTTGATTTAGTAAGAACAACTTACCT 201387 30 100.0 37 .............................. AAGTTACATTTTGCAGTACTTCAAAATCCTGCTCTGA 201454 30 100.0 36 .............................. TCCAAGCCTAGCCGCCTACCTATGTCATGTATCGCT 201520 30 100.0 37 .............................. CTGGCTATACCAAGTTTTGTAAATATGCTCAACCAGA 201587 30 100.0 37 .............................. GAATTCCACGGCCTTTTCTCGTATTTCGGATATAGTT 201654 30 100.0 36 .............................. CAGGGTTTAGAAGTGCTCAAGAATGCACATATTGAA 201720 30 100.0 35 .............................. TTGATCAACATTGCGACGCCTGAAGTTCCAATCAT 201785 30 100.0 36 .............................. ATGGAGCTTTACAGTGCGCGACGTGTTGAAAGAGCT 201851 30 100.0 36 .............................. TTTGGGCGATATTTGAAGGGGGTAGAAAAATGACGA 201917 30 100.0 36 .............................. GTATCCGATAGACAAGCCATTTAGTGCGCCTTGCTT 201983 30 100.0 36 .............................. AAGAAGAGCAAGCCGAGCCGCCAGAAGAAAAACATA 202049 30 100.0 36 .............................. AATTTACCCCCTCTGATGAAGATTATGAGTGGTTTT 202115 30 100.0 37 .............................. CTTTCTTAAACAGGACTAATATTGTTTCAGCTGGCGA 202182 30 100.0 37 .............................. TACTTCTGTTGCAAATTTTTCCAACACGCCCTCCCAT 202249 30 100.0 36 .............................. TAGATGCTGCCGCGGTTATAGATTTCTTTCAAAATA 202315 30 100.0 35 .............................. TGTGCTGGCGACATTTCTTTACCTAATTCTTCTGC 202380 30 100.0 36 .............................. AAGGTAAAGTGTTAAATGCACGAAATAAAGAGCTAA 202446 30 100.0 37 .............................. CTAAATACGAAGACAGAATACAAGTTATAAAAGCATA 202513 30 100.0 38 .............................. CGGGTTAAAATCATCTGTGTTTATTCCATATGTACTTT 202581 30 100.0 37 .............................. CAAATAATATACACAAGTCCAACAAAGGGATATGATT 202648 30 100.0 36 .............................. AAAGGGACATGTGTTATTGGCAAGTACCGAGAGGTG 202714 30 100.0 36 .............................. TGAAATTGATCCAGAAACAAAGGAACTAACTCTGTT 202780 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 133 30 100.0 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : AACCAAGGACGTAATCAAAATGTTTCTTGACGGCATAAGCGTTGAAAATTTCACCATCGTGGAATTTTACACCTTTTCTAAGGAAAAACACGTAGGCGGTCCCGTTTTCTTGAATTTCCCATCTTTCGGCAAGAGATGGAATAATTTTGAGATTCTCATCTACGTCTATTAACCCTTCAAAAATGTGACTGGCAACTATGTTACTTACTGAATCTGGAATATTTGGACCAAGCAAAGTTGTGATGTCAACCCCGATGAGGAATCTCAACGTTCCACCAAGATTTGCCGCGAAAAAGGACGTAAAAAGAAGTAAAATGCACCAGGAAACGGTTTTTCTCAATAAATTCACCCCCTTTTGGTATATTTAGCCAAAATTCTATCATGGCAAAATTATCTTGTCAAGCTTTTTTACTAAATGTGTAGAAATAATAAACATCGAAGAGGAATATTCAGGGAAAATGGGGAGTTTCGATGGGCAAAAATGGTTGAAGTGTGGCTAA # Right flank : CCCATAAGATACTGAATAAATAATAATCCCCAGAAACAGATTTGTCAATAAATATTATACTATATGGCATACGGGAATGTATAAAGGCAAGCATTAAAAGCAGGAAAATTTATAAAGGCACATAGTAAAAAATGTACGGGGAAAAATTACCTATTGGAGGTTTTAGAAAAAAAGGCGATTTTGGGGGTGTTTGTTAACAAATCTTAGAAATTCAAGTGAAATGTCACAAGGTTATTGAATACAATCTTAATAAAAATTATTCAATCCACAAATTGCTATTCTATATAATAATTCACAAGTTTAGAATTATTTAATTTATAAATCTATCAATCACTTTTCTTGAGTAATTCTCATCTATTATGCCAGGTTTTTCATGTATTTGTTTCTTCACTTTTGCAAAATGATGAATTAATAAGTGTTAAGTTTAATCAAAAAATCATCAGTTCCTGACTCCTTTGAAAACCAGTGTATTCGTCATACCAATAATTGAGGTTATCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 1135250-1130217 **** Predicted by CRISPRDetect 2.4 *** >NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1135249 30 100.0 36 .............................. TATCAAAAAAGTTCCAGAAGAAATTCCTTTTGGTGC 1135183 30 100.0 36 .............................. CGGATATGCATTACAACAAGGGGCTTGGCAAACTTA 1135117 30 100.0 37 .............................. TTAATCGCTGCAATCACGTTATCACTTCCTTATATAA 1135050 30 100.0 36 .............................. ACGAAATAGAACACTCTAATTTTGAACTTCCTATAG 1134984 30 100.0 36 .............................. ATCAGTTAGATCTCTCAGCATCTTGTACCATTGCTC 1134918 30 100.0 42 .............................. TTAAAGAAAGTCGAATAAATGATATTGTATATGTTATACGTA 1134846 30 100.0 37 .............................. TCATACTTCTCAAGATTTACAACTTTACCAAGCTCTT 1134779 30 100.0 36 .............................. AATTAATCCTTTTTGTTGCAGCCTGTTTCTTAGCCT 1134713 30 100.0 36 .............................. GTATTTGGGTCTATTTCAAGGATCTGTGTAGCACTA 1134647 30 100.0 37 .............................. AGGTACCCCCCATGGCTTTGCTTGGCGGAAGAATTTT 1134580 30 100.0 36 .............................. AAGATCTTGTGTATACCCGCTTCTGTGGCAAAAAAG 1134514 30 100.0 38 .............................. GTTGCTCATCACATCTGTTTCTCTGCTTAACCAAATTG 1134446 30 100.0 36 .............................. TATTTCCTGGAACTTCGAATTTTACTAGTGTATCGG 1134380 30 100.0 42 .............................. TTAAAGAAAGTCGAATAAATGATATTGTATATGTTATACGTA 1134308 30 100.0 37 .............................. TCTTCCCTGAAAATTGGCACCTGATAATCTTCGACGA 1134241 30 100.0 37 .............................. GTTCTTTCTCTACTCTTTTCTCTTAAAGGGGTTCTTT 1134174 30 100.0 36 .............................. AACAGCTTGTGTTAAGGCTAAATTGCTACTTGACGT 1134108 30 100.0 36 .............................. TGGAGAAGCTCGGTACTACTGCAAAAGATGATTTGG 1134042 30 100.0 36 .............................. TAGACTGCCAACCATATTCACCATTATGCAATCTTT 1133976 30 100.0 36 .............................. TCCTTAACACTCCATCCATTACCAACCAAAACATTA 1133910 30 100.0 36 .............................. TGAATATGTTTCTGTTCGCGATTTGCCGCGTGTTCG 1133844 30 100.0 35 .............................. ACGAACAAAAATATCCAAAAGCGACACTACAGCAT 1133779 30 100.0 42 .............................. TTCAATCATAGTTCTCGCAGCTTCCATTTCAGCTGCAGAAGG 1133707 30 100.0 42 .............................. TTCAATCATAGTTCTCGCAGCTTCCATTTCAGCTGCAGAAGG 1133635 30 100.0 36 .............................. AGAAATCCAACCAATCTGCACTGCAAGGAAAGTCGA 1133569 30 100.0 36 .............................. TTGATAATTCGAGCCGAAACTGTAGGATTTTGCTGT 1133503 30 100.0 37 .............................. TTTGAAGGGGGTAGAAAAATGACGATAAAAGAGAAAA 1133436 30 100.0 36 .............................. CAGACGCGCGTACAGCGAACTTGTTGAGCAAACTGA 1133370 30 100.0 36 .............................. ATAAAATGAGAGGATATGTTTAGTTTTTTATCTCCA 1133304 30 100.0 37 .............................. AAATAACAATTGACCTCGATACTTCTTTGCTACCAAG 1133237 30 100.0 37 .............................. TAGAAGATTTATAATCAAAGAATAGGAGGGGAAAGTA 1133170 30 100.0 36 .............................. GTGCAACAATTATTGGATCCAATCGGAACAATTATT 1133104 30 100.0 36 .............................. AGAATAATGCCCTTCTAACACAGTTAGAAAGCATCG 1133038 30 100.0 37 .............................. GCGATTCTGAGATTGCTTTATTCTTTGCCATTTTGTC 1132971 30 100.0 37 .............................. GTAAACTTACAGGGCTAAAACAATTTCTGGAAGAAGG 1132904 30 100.0 37 .............................. TGGGAAGTTAAAATAGAAGTTGAAGTTGACAATACAA 1132837 30 100.0 36 .............................. CGATTATCGGGCAATTTGATCCAAAATGGCTTCCAT 1132771 30 100.0 37 .............................. TTCAAAAAGGTGATGTTGTAGTTGAGGATTTTATTTG 1132704 30 100.0 38 .............................. AAGATTGAAAAGGGAAGAATTGATGATGAATGAAATTG 1132636 30 100.0 36 .............................. GCGTAGGAGACCCGATCTATGAGGATCTCAGAATGA 1132570 30 100.0 35 .............................. TTGATTAGTTGCCACAGCTCCGTCTTTTCTTTATA 1132505 30 100.0 36 .............................. CATCTCCGAAGCCTTTGCATTCGGTTATGCAGTGTT 1132439 30 100.0 36 .............................. GTGATCGCGTGACGCTGGAACTCATAGAGGTTCCAG 1132373 30 100.0 36 .............................. AGACCTCAAAAAGTTCTGCTCGGCAAATACAAGGGG 1132307 30 100.0 36 .............................. TGCGCTTCCAGCGCAGCCGCAAGGGCGAGTTATCGT 1132241 30 100.0 36 .............................. GGAAATTCAAAAAGCTCGGATAAAAAACATGGCACG 1132175 30 100.0 37 .............................. GTTGTACGAGCCCATTTCATGCGGATTTTCGAAAGTT 1132108 30 100.0 38 .............................. TTTAATGCATATATATGTAATATTCCATTGTATGCTGA 1132040 30 100.0 35 .............................. ATATTCGGCGACAATTTTGAACTTGTAGTACCAGA 1131975 30 100.0 37 .............................. TCTTGCTTTGGCTCTGTGGTAGGTCCATAGAACTGGA 1131908 30 100.0 37 .............................. TCTTGCTTTGGCTCTGTGGTAGGTCCATAGAACTGGA 1131841 30 100.0 36 .............................. AGGACCAGTAGCGAAAGGGGGTGTATGTAGTAGGCC 1131775 30 100.0 36 .............................. GCGCTCTTGGATACAAGGCATATTACGTTACAATTT 1131709 30 100.0 35 .............................. ATATTCGGCGACAATTTTGAACTTGTAGTACCAGA 1131644 30 100.0 37 .............................. TCTTGCTTTGGCTCTGTGGTAGGTCCATAGAACTGGA 1131577 30 100.0 36 .............................. AGGACCAGTAGCGAAAGGGGGTGTATGTAGTAGGCC 1131511 30 100.0 36 .............................. GCGCTCTTGGATACAAGGCATATTACGTTACAATTT 1131445 30 100.0 37 .............................. GATAAGATGGGGTAGGCTCCATTCCAAGGATTATCCG 1131378 30 100.0 36 .............................. GGAAAGTGCTCTGACAATTTCCAAATGGTTATTCTC 1131312 30 100.0 38 .............................. CGATATTAAAGATCTCCAAGGAAAGTTGAACGGTTACT 1131244 30 100.0 36 .............................. ATGGCTATCACGATGACTGTGTGATGGCTCTCGCGC 1131178 30 100.0 37 .............................. TCCCTTCTTCAATCAATATAGCTCCATCTTTATACCT 1131111 30 100.0 36 .............................. TAATTGCTGGCTGCGTTCTCGCAACTACTTTTGGTA 1131045 30 100.0 37 .............................. GACGACTATGCTCTTTGGCATTTCGTTGGCGGTTACT 1130978 30 100.0 36 .............................. TACAGATGCTGTATAGATTGATGTATCATTTGGAAG 1130912 30 100.0 36 .............................. AAGGCTATGCGATAGCACGTATCTGCATCGAAATTT 1130846 30 100.0 38 .............................. CCGTCTGATGATATGCCATCTACGGTACTATCTATAGA 1130778 30 100.0 37 .............................. GCGAGCGCGTAAGCGGCTCTTTGCATTGCTTTATCAA 1130711 30 100.0 36 .............................. TATTGTTTTAAACCAAGATGGTAAATTAGTGTATTT 1130645 30 100.0 37 .............................. GTGCTCGCTGAACACTAGCTTCGACTGTTTTTTGCCA 1130578 30 100.0 36 .............................. AAATTGAGAATGGTGCACTTGTGGAGGTACCGATTT 1130512 30 100.0 35 .............................. GGAAACTGTCTTTCCAACTCAATCTTTCACTCCCT 1130447 30 100.0 37 .............................. AAACTGTCGTTAAGTTACACATACATTGCGGATGAGC 1130380 30 100.0 36 .............................. ACAAGCTTTGCGAGTTCGGTCGGAAGCCCAGAGTTT 1130314 30 100.0 38 .............................. ACCGCAAACGCTCTTTATCAAGTCATTTCCGCTGGTGT 1130246 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 76 30 100.0 37 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : AACATAAATTGTACCATCTGCATTATATTCTACTTGAGCTGTAGGGTGTAACTCTTCATCGAGTAAATCACCAAAACCGATGATGTTATAGTTAGAGTCTAGAATTACTGGATAAAAACATGTTGCACCTTCGTAGCGACCTGAAGTGCTTCCCCAACGTCTTAAATTATATACATCTCCACCAGTATGTTGCTTGCGAAAAATAGTACTTTCTGATGAATATGAAAATATTGCATATTCATGAGTCACAGAAAATTTTTTGCCCTGAGTTCCGCCGGGATTATGCTGAATGGTTATGCAGGTATGAGTTAGGTTTGGAAAAATTTCGTGAAGGAGAATCCATAGATGAGCATATTCATTGTCATCTATTGTAGTAATCAAAACACCATCATCAGCAAGTATTCTTTTTGCTATCTTTAAACGTTTCTGCATCATGGATAGCCATTTACTATGACGCCAATTATCAGTGGAATCAACATAATCATTATTATATTGCACAC # Right flank : CCATAAGATACTGAATAAATAATAATTCCCAGGAACAGATTTGTCAATAAATATTATACTATATGGCATGCAAGAATATATAAAGGCGAGCATTAAAAGCGGGAAAATTTATAAAGGCACATAGTAAAAAATGTACGGGGAAAAATTACCTATCGGAGGTTTTGAAAAAAAAGGCGATTTTTGGGGTGTTTGTTAACAAATCTTAGAAATTCAAGTGAAATGTCACAAGGTTATTGAATACAATCTTAATAAAAATTATTCAATCCACAAATTGCTATTCTATATAATAATTCACAAGGTTAGAATTATTTAATTTATAAATCTATCAATCACTTCTCTTAAGTAATTCTCGTCTATTATGCCAGGTTTTTCATGTATTTGTTTCTTCACTTTTGCAAAATGATGAACTCCACTTTCATAGAAATCAAACAATGAAGTGTCCTGGTTCAAAAAAATTCCAATATAATCTGCTTAGGAGGTTAGAAAATGAGAATAGCATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 1147256-1146036 **** Predicted by CRISPRDetect 2.4 *** >NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1147255 29 80.0 37 AG...T..AT-................... CAGAATGGGATCCAGATGCATCAGATTTTTTAGGTAC G [1147250] 1147188 30 100.0 36 .............................. GGATAAAAATTTTGCAAAACCTGCAGGATCGATTTT 1147122 30 100.0 36 .............................. GGATAAAAATTTTGCAAAACCTGCAGGATCGATTTT 1147056 30 100.0 36 .............................. GGATAAAAATTTTGCAAAACCTGCAGGATCGATTTT 1146990 30 100.0 36 .............................. TGGTGAAGGCTTTATTAGGCAACATATTAAGGGATA 1146924 30 100.0 36 .............................. TGGGTACGGAAAGAAAATCTTATGTCCGTTTCATGA 1146858 30 100.0 36 .............................. CCGAAAAAAGGCGTTATTAGAATTTTCAGTTTTAAC 1146792 30 100.0 36 .............................. AACCTTTTATTTTGCGAAGGACTAAAAAGATACTTG 1146726 30 100.0 36 .............................. TGGTGAAGGCTTTATTAGGCAACATATTAAGGGATA 1146660 30 100.0 37 .............................. CAGTATAAACTGCAAAATCTTAAAGGAGGAATGAACA 1146593 30 100.0 36 .............................. TATTGAAAACAGTTGTATCACCACAAACCTTGGTTG 1146527 30 100.0 36 .............................. TATTGAAAACAGTTGTATCACCACAAACCTTGGTTG 1146461 30 100.0 36 .............................. TTGTGGTTGTGAGTTGACAAATCCCGACTTTGAAAA 1146395 30 100.0 37 .............................. CCATCCCCAGTATTACCATTCACATGGCTAATTTTAG 1146328 30 100.0 35 .............................. GCTAAATGTTGTGCTTATGTGAATACCGAAAACTT 1146263 30 100.0 36 .............................. AGCTTTATACTGCTTAAAAGGGGTTGAAAATATGGT 1146197 30 100.0 36 .............................. TTGGCAAATAGAGAAGTTCTCTCTCAAAATCTACTC 1146131 30 100.0 36 .............................. TCTATATTCACACAAAAAGAGGGCTTAGCAAAATTG 1146065 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.9 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : GTTCTTTTTCAAGGATAATTTCCTTTTCATGAATCTCCAAACCCGGAACCCCATTAACTTCACCTTGGCGGAGTAATTTTTTTAGGGTATCTAATTCTTGTTCATCAAAAGCTATCACATATGATCCTATACGTTTTATTTCGAAATCAAGCTCTTTTGCAAGCTGAGTATAAAGTTCATTTCCCTTTGCACAGAACTTTGCTCTTACTGAACCGATTGGATCATCATAACCAGCGTGCAATATAGCTGAATTAGCCTTTGTAACACCCCAGCCTATATCAAGGTTTTTTTCTATTAAAGTTATTTCCAGATCATACATAGAAAGCTCTCTTACAATTAAAGCTCCTACCACTCCTCCACCAATCACTACTACTTTCATCAAGAACACCTCCAAAGAAAAAAGCCACACCCCAAAAGGGATGTGGCTTTCTCCGGGTCTCTTTACCACACCACTTATATTATGCCACGATTTTCCAGAAAATCAATATTCAGGAAAAATA # Right flank : AGCGATATGCAATATAATCTATATGATGATCCATTTCAGCAGGCAGAGTATGCTTATAGTCTTATTAAGAGCGAGGTGATTTCAGATGGCAATCAGGAATGTTACGGTAATCCCTGCTCGTAAACGGATTGGAAATAGTGCAAAGGCTGAAGAATTGCCTAAGCTTCGGGTAGCAGCCTATTGCCGCGTATCTACGGACAGCGAGGAGCAGGCAACCAGTTATGAAGCGCAAATTGAGCACTACACAAACTACATTAAAAGCAATCCGGAATGGGAGTTAGCTGGCATATTTGCGGATGAAGGGATTACTGGAACCAACACGAAAAAGCGTGAAGAGTTTAACCGGATGATAGAAGAATGTATGCAGGGCAAAATCGATATGATAATTACGAAATCTATCAGCCGTTTTGCAAGAAATACGCTGGACTGCCTAAAGTACATAAGGCAGCTTAAAGAAAAAAATATTCCAGTTTACTTTGAAAAGGAAAATATAAACACAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //