Array 1 588687-589082 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000031.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 588687 30 76.7 26 ACCA........TG..........T..... ACCCGACCCGGGCCGCGCACACCGGG GCAC,A [588709,588718] 588748 30 76.7 31 ACCA........TG...............T ATGAGACGCCCGAACAGCGTCCCGGTTTACT 588809 30 93.3 31 ..........T..................T TCGCGTTCATTTTTGGGGTATGGCGAGAAGT 588870 30 100.0 31 .............................. AGGGGGTATGCGCCGCCGCGATCCTCCTCGG 588931 30 100.0 31 .............................. AGGGGGTATGCGCCGCCGCGATCCTCCTCGG 588992 30 93.3 31 .....................G.......C ACGAGTCGGTGCCGGCGAACGTGCCGGCCAT 589053 30 86.7 0 ......................A...T.GG | ========== ====== ====== ====== ============================== =============================== ================== 7 30 89.5 30 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GCTCTCGAGGGACCGTCTCCGGTGTTTTGCCCCAGTCAGCGAACGAGTCCCGTACCGCGTCACGCATGAGCCGGAAGCCATCGAGCAGATTGGTCTTCCCCGACGCGTTGGCTCCGAACACCCCCAGCACGGGCTGCACCGTGACATCGCGCCCCCGGTGCCGCAGACCGGTCTCACGCGCTGTCCCCTCGTCGAACTCGGTGGCGATCAAAGACAGTTCGTGTTCGTCCCGAAAGGACCGGTGGTTGGCCATCCGAACGCGGATCAGCACGCGCGACCTCCCATGGATCGGCTCTTGCCAGCCTGTCATTAGGCTATTGGCGCAGTAATCCTGCGCTAGACAGCCTATGGTGCCCACATCTGGGACGCCACTTTGTCGCATGTGCCAGCGTTCCCCGCGCACGCATCCCCGCGTCCGCGGGGAGACCAGGGCGGGGACCATCCCCGCGTACGCGGGGAGCACAGTAGGTGGTGCTGGTGCCGCGCTTTGTGTCGGTGGG # Right flank : GCGCGTTGGCGGAACCCGATGGCCGAGGAGACTCCCCCGGTGTCGGACCGTTTTGACGGTGGGCTGACTTACGCTACTGGCGTGGTCAGGGCTGTGGTGTTCGACATTGGCGAGACGCTCGTCCGCGACGATCGGTACTGGGGATCGTGGGCGGACTGGCTGGGCGTGCCCCGCCACACGCTGTCGGCTCTCGTCGGCGCGGTGACAGCCCTCGGGCTGGACAACGCGGAGGCCATCCGGCTCATCCGGCCCGGCATTGATGTACATGCGGCCCGCCGGGAACGTGACGAATCCGGGCAGGGCGAATTCTTGGATGAGACCGATCTGTATCCCGACGTACGACACGGGCTGCAGGCGCTTCGGGATCTGGGACTGCGCGTCTGCGTCGCTGGAAACCAGACGACCAAGGCGGGCGAGCTGCTGCGCGGGCTGCATCTTCCCGTCGATGCCATCACCACGTCAGAGGAGTGGGGGGTGGCGAAACCGGACTCGGCGTTCTT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66965-67664 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000052.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66965 29 100.0 32 ............................. TTGATCAGAGCAACGGACAGGTTCATGACGCC 67026 29 100.0 32 ............................. ATCGACAACGTGAACATGTCAGCGAACATGTC 67087 29 100.0 32 ............................. GACTGCCGCCGGGTGGACATGCAGCGGATCGG 67148 29 100.0 32 ............................. CCGTAGCTGGGTCCGCTCGGCCCGCCGCCGCC 67209 29 100.0 32 ............................. CTGCGGGGCATGTCGCCGGAGCAGATCCAGGC 67270 29 100.0 32 ............................. GCACGCATATCAGTGCCTCACTGTCCTGCGTC 67331 29 100.0 32 ............................. CCACATGTGCGGTCACCTTGGCGGCCTTGACC 67392 29 100.0 32 ............................. AACGGCGGATACGCGCTGTCGCCGGTCTGGGT 67453 29 100.0 32 ............................. CGGGTCACCGGGTGGACGCAGGCGCTGGCCAA 67514 29 100.0 32 ............................. GGCGGCGTCAAGGACGTCAAGGAAGCGCTGGA 67575 29 100.0 32 ............................. CTCATCAGGGAAGGCCACGACCATGACGAGTC 67636 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TACTGGAAGGCGAGCGGGTGCCACTCGCGGACGTCGTGGTCGACGCCGAACTCGACCGGTTCCCTCGCCTGCGGTTTCCCGAAGACCGGATGCGGGCCCTGCAGGCCGTCGCGCCGATCGTCGCCGGCCTGCCGTCGGGCCAGATCGCCCGTCAGGTCGTCCGTACGGCGACCCGCCTGAACCTCGATGTGATGGTGGTCAACGAGACCGTCATCACCGCCATCGGGCAGGCACCGCCGAACCTATCGCGCCTCACGACAGCGACCCTGAGTTCCGCCGCCGTGGCACGCTTGGACGCTCCCGCCACACCCCCGGAAAGAACCCACCCAGAACCCGCGCCGAAGGGCGCGTCGTCACCTCCCCGATCACCAGCCCGCCATCGCCGCAAGCCCTGATGGCACAGGATGGCTATAGTTGATCAGGTGTATAAGCTCGGCTGGCTGTCACATGCCTCGCTCTGAAAAGTGCAAGTGAGATTGTGAACCTGCAGGTCGGGAAGT # Right flank : CGTGTGAGCGGCCACGAGAAACTCCTGTTCAGCGGACGGATAAGTCCAGGCTGATGGACAGGGAGTCCCGGCTGGCGGTCATTGGAAATCCTGGTTGATGGCCAGGTAGATCTCCTGATCTTGTCCGTGTGTCACCACGTGGGCGCCCCTCCGCGGGGGCTTGGGTTGCGGGTTGTCGAGACCTGAACCCAATCCCGCGGAGGGGGCCCGTGACGAAGTCTGGCATGGAGCTCATGGAGATTTACGAGGCTTACGACCTGACCCGCTGCGCGTGGTCGGCGGCCCGGCTGGCCGGGTGCGATCCCAAGACCGTGCAACGCTATGTCGCGATCCGCGCGGCCGGGGGCAACCCCTACCAGACAGCGCCACGGGCGAAGCTGATCGACCCGTTCCTGGCGAAGATCGAGGAGAAGGTCGATCTGTCCAAGGCGACCGTCCGCGCCGATATCGTGCACTCCGACCTGGTGGCGATGGGATTCACCGGGTCGGAACGGACGACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13742-13053 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000056.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 13741 30 96.7 36 ......G....................... AGCCCGCGTGAACCTTGCCATCCGTGAGCGTGGTCA 13675 30 100.0 35 .............................. GCGGCGGCAGGTCCGCCTGTCCGGCGTGTGGGGCT 13610 30 100.0 36 .............................. TTTCTCCCTTTGTGCGTGTTGGTTCTTGGACTTGCG 13544 30 100.0 36 .............................. CGGCCAGGCCGTCCGTGCGAACGTTCCCGGAGACCA 13478 30 100.0 36 .............................. GGGCAGTCGCCGATGGTGGTGTAGTCCCAGACGGCG 13412 30 100.0 35 .............................. GCGCGCTGTCGGCGGTCTACGCGGCTATCGCGCTG 13347 30 100.0 37 .............................. GCAAGCGGTACAAGCAGCGGCTCGCCGCAGTCCAGCG 13280 30 96.7 34 ...............G.............. GTGAGTACCCGGTCGCCGTTGATGGTGATCTGCG 13216 30 90.0 36 .........A.....CA............. CTGTTTGCCCGATCGCAGACGCCGGCGAGTGCGCTG 13150 30 93.3 38 .................A..A......... GCGATCACCCGCGACAGCACGAGCAGCGCGGCTTCGCT 13082 30 80.0 0 ...............GT.......T.TCG. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 96.1 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : GCCGCGTCGCCGAGTGGCCTGCGGGAACACCGGAGCGCCGTGCCCCAGCGGGACCATGCCGTACGGCCCCGCTCCCTGAGAGTGGAGCTGCCGTCCCAGCTCGGGCGCCTCCCGGGCGAGCAGGTCGTACGCCAGGGAACGGCCGGGCGCCAGCACCTTCGTCCACGCGAGCTCGGTGGCCGCCGTGGTGACCTCTATCCGTAACCTCACAGTTTCCTCCCCGCGTCTGCCTTCCACTACCTACAGATGGACGAAGGCGAGCACGGACCGTTCCTGCCCGCGTTTGCGCAGGTCAAAGGCAGGAGAAGTAATCGGAGGCTAATGTGAGGGAGCTCGTGTACCGGAGAACCGGTTACCCTCCTGCGAGGTGGCCGGAGAGTGGATATCGATCATGATTTTGCAGCAGACCTCCCGTGTTTCCTGCACTACCGGAGGTTCACTGCAAAACGCCGCCGCGAGACGCCGGTCTTGCGCGGTTTCACCTGCGCCTTTACCGTGGG # Right flank : CCGGGATCGCTGACTCCGAGTTCTTCCAGGCCAGAGGGCTTCTCCTCCTGATACTCGCTTTTCGTCCATCTGTAGTAGGTGAGAGCGAAATCGCGGGTGAGGGGACGGAATGTGATGAGGATTTCCCGGGGGCGGACCGGGACGGGCAGGGCAAGATCGCCGCTGGACGTCGTGTCGGGCTGGGGGATCGTGGCCCTCGCCGGTGTGGCAGGTGCGGTGGCCGCCGGCACCGTTCCCGACGTGATCAAGGGTTGGCTGGGAGATCAGCGGCCGTTCCTGACGGCGCTTTGCTTCGTGTCGGCGCTGACGTTCGCCGCCATCAACCTGTGGCAGCAGCGCAGCAAGGGCGTCGGCATCGTGATCTCCCTGCCGCAGACCACCTGGCGGGGGCCGTGGAGCAACCAGTGGACGGCGGCTGCCGCCGACCACGCGCGGCGCCACCACGACTCGTGCTTCGTCGTACGGCGTACCGTTCCGGCCGCGCGGCCGGGCGACGACGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 23445-23805 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000056.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23445 30 100.0 37 .............................. ATGGCACCGGCACGGAGCTCACCGGCGGCTCGTACGC 23512 30 100.0 36 .............................. ATGATCACGAGGGATGCGCGTTGACCCTGCCAGGTG 23578 30 100.0 35 .............................. GCGGTGACGCGGGTGCTGTCGCCGTAGGTGCCGAT 23643 30 100.0 37 .............................. TGCTGCTGGTCGGCGACGCTGCGCTGGTTGGGCTTGC 23710 30 100.0 36 .............................. CACCAGATACGGGAGGGGCGCGGGTCGTCCACGTCC 23776 30 83.3 0 C......................AT.G..G | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTGACGCGGGTGCTGTCGCCGTAGGTGCCGAT # Right flank : GCGTTCTGGGGCCGCTGGAGGCGTGGTTTACCGAGAGGTCAGATCCTGAAAACTAACCCCCTGGGGTACCTCGGAACCGCAGGGGGTCACAGCTTTGGGCGTCCCTTGACAAGAGGATCGAGGCACGGCACGTCTGTGCAGAGGTGCTGTGTCAAGGCCGTATCTTCAACGGCCAAAGCTGCGCGCAACGCCACCGCTCAGGGCCTGCTCGAATGGGGGAGGTCAACGCCGAGGAGCTTCAGGAGTTCGGCGGTTGGGACGAGGTAGGCAACGCCGACACGGATGAGGCGGCAGGGGAACTCGCCCTTCTTGGCCAGCTCATAAGCCTTGGTACGGCCCAGGCCGAGGGCGCGGGCGGCGGTCAGCAGGTCGACGGTGGCCGGCAGTTGCTGCAGCTCGGCCAGGGTGAGGCCCTTCATCTCTTCTCCCAGGAAAGTGCCGGCCGGGTGAACCCGACCACGTCAGAACGAGCGGAATAGGACGCGTACCGCACCACGTCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1704-547 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000075.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1703 30 100.0 38 .............................. TGAACGAGGGAGGCGATAATTGCCGTCGTGCCGAGGTA 1635 30 100.0 35 .............................. ACGATCTTTCCTTCGGCGTTCACCAGTACGCTGAC 1570 30 100.0 37 .............................. AACGAAATTCCAGTCCTTACCGAACGCCTTGCGCGTA 1503 30 100.0 36 .............................. GTATCACTGTGTAAGGACACCTGGGTTGTGAGTGAC 1437 30 100.0 35 .............................. CGGCTCGACCGGCCGAGCGCCGGTCGCGGGAAGCG 1372 30 100.0 35 .............................. ATCCCTGTACTTCACCTGAATGGACACCGACACAC 1307 30 100.0 46 .............................. TCGCCGGCGCGGTCGAGTACACGTCGGAGGACGGGTCCTCATCGTC 1231 30 100.0 36 .............................. AACCGGTCCGGCCCGTTCCCGCCGGTGGTGTAGGGC 1165 30 100.0 36 .............................. GTGGCGTAGCCGGCCCCGGTGGCGTCGAGCACGGCG 1099 30 100.0 36 .............................. GTGCGGACGGCAGTGAAATAAAAGCGATCAATAAGG 1033 30 100.0 37 .............................. TCAGCGCCCTGCACTGGGGGCAGACTCCGGACATCAC 966 30 100.0 35 .............................. CGGGAGCGTGCGGTGCGGATCGGCGCGGAGGAGCG 901 30 100.0 34 .............................. CCGGGCTCGCGGTCGCGTTCTCCAAGGTGTACGG 837 30 100.0 35 .............................. GAGGATCTACGGCGCCTCATCAAGGCCACGTCGGG 772 30 100.0 35 .............................. TGGCGTACGCCTCACACGCCGCCAGAGCGTCACAC 707 30 100.0 35 .............................. CAGCGTGGGCGCGGATCTGGCAGGCCGGCGAGCAG 642 30 100.0 36 .............................. GCCTTCACCCGCAGCGTCACGATCACGTGGCCCAGG 576 30 90.0 0 ....................A..C...G.. | ========== ====== ====== ====== ============================== ============================================== ================== 18 30 99.4 36 GTCCTCATCGTCCCTACGAGGGGTCGCAAC # Left flank : CCGAGCGCCGTGCCGCCGGCAAGGACGACCCGCGCCAGTCGCGCCGCTGGGACACCGACGACCACATCCCCCGCCGCTGGTTCCGCGATCAGGTCTGGCGGCCCGCGCTGGCCGCCTCAGGCCTGGAGTTCAAGGTCAAAATGCACGATTTGCGCCACGCCCACGCCTCCTGGCTGCTCGCTGGCGGCGCCGACCTGCAGGTGGTGAAGGAACGGCTCGGCCACGGCAGCATCTCCACTACCGAGAAGTACCTCCACACCCTCCCCGACGCCGACGACACCGCCCTCGACGCCCTCGCCCGAACACGTTCTCGCTCCCAAGGGAGCATTAGATGACCTCTTGGATAAGCAACGGCGGTGCGGGCAGCCCTCACGGGGTTTACTCTGAATGACAGCGTTTGCAGCGAACCTCCCGGCTTTCTTGCACTACCGGAGGTCCACTGCAAAATCCCGTCTCAATGGCCCTCTAGACCAGCGCTTGAGCTGCGCCTTTACGATGGG # Right flank : TTCTGCAAGCGCAAGCCTTCCGGGGCGTCCGCACGGGCCTCCATCGCTCAGGTGAGAATTAGCGACCTCGGAGCTACCAGGGGGCAGGTAGCTGCCGCACTACAACAAGGATCTTGGCGGATGGGCCGAGCCAATGGCGTCCTGACCCATCCGCCAAGATTTCGTCAGCAGCTGGCGACGCGACGGCGACGCGAGCAACGGACGTTCACCGTCTCGCATCGCTCGGTCACCCAGTCCACACCGGCCTGACAAATCCGCCTAACCAGTTCCCGGACTCGAACTTCGGCTTGCTTCGCATCGACGCCGAACTCCATGGCAGCCCATTCGAGCAGCTCCGGGTCGGGCTGGGTAGCGGCTGCGCAGATGCGCTCCAGCACTCTGCGCTCAGAGGAGCTCTCCTCAGCGAGGACGAGGGACAGCTCCCGCCGCGCATCCTCCGTCTCCTCATTGCGGGTGAACACGTCCTCCGGGCTCAATTCCTCTTTCGCCGTCCAGGGGAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGTCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 8363-8091 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000064.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8362 29 96.6 32 ............................A TTTTGGACCAGGTCAACGCGGTCGCGGACGGT 8301 29 100.0 32 ............................. CGCATCGGCAGCGCCTTGGAGCGCTTGATCTC 8240 29 100.0 31 ............................. CTTGACAGTAGCGGGTTGCGGTTGCCGGGGG 8180 29 100.0 32 ............................. ATCGGGACGCCCGTGCCCTGGCACTCCTGCAC 8119 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : ACCCGTCCGACGACGAAGATCCCGCCGCCGATCGGAGTCCTGATCTGGTGCACCTGTGGGATCCACAGGCCGGCCCGCTGCCCGCCGGCGTCAACTACGGGTTCGAGGCCACGTCGTACGACGCCACCGACCTGGTGAACCTGGAGTAGCGATGGCGTCAATGGTGGTCATCTCCACGACGGCGATCCCCGACCATGTCGGTGGGGCGCTGTCCCGCTGGCTCATCGAACCCACACCCGGCCTGTATGTCGGCACGGTGTCCGCCCGCGTTCGCGACGAACTCTGGTCGGCGGTCAGCGCCAGCGTCGGCGACGGGGTAGCCGTCTTGATCCATCCGGCCGATACCGAGCAAGGGTTCGCCATGCGTACGGCCGGGCAGCGCCGTCGTCATGTGATCGATTTCGATGGCCTACAGTTGATCAGATTCGTGGCGAACGCCGTCGACGCGACCTCTGCCTCAGAAACTGCAAGTGAGATTGTGAACTAGCAGGTCAGGAAGT # Right flank : CAGCGGCCCGGGACCTGCAACGAGAGATCGAGTTCTTCGGCCAGGCGCCTGCAGCGGCGGCGCTGCCCCGAGGCCGTTAGTCTCACCGCATGTACCCGGTCACGCTCACCTCCCCAACCGTCAGCCTGCGTGAGTTCGAGGCCTCTGACGACGTGGACGCCGTACTGGCCATCTACGGCGACCCATGTGTCACCGAGCATCTGAGCTTCGAGCCCCGCGACCGGGCCCAGGTAGAAGCCACCCTCGCGAGCGTGACCAAGGCCGCCGGGGACGAACCGCGGACCGAGTACTCCCTGGCCGCGGTCCGCCCTACCGGAGAGCTCATCGCCTTCGCCCGCCTGGCCGTCGACACCCAGCATCCCGGCCAGAGCAGCGGGCAGATCGGTTTCGCGCTCTGTGCCGACCAGTGGGGGCAGGGACTCGGTACCCAGGTGGTGGAACTCCTGCTTCGGCTCGGCTTCGGCGAACTCGGCCTGCACCGCATCTGGGGTGCGCGCAGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18752-18297 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000064.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18751 29 100.0 32 ............................. CTGCCCCGAGTCGCGGACATCGAACATCTCGC 18690 29 100.0 32 ............................. GTGGACGCTCCACCATCGCCACACGGAAAACA 18629 29 96.6 32 ..........................T.. CGCGGCTACATCTTCGCGGCCCGATCGGCCTC 18568 29 93.1 32 ...........CT................ GGCGTCTTCCTTGATCGCATGTCCGGCACTGT 18507 29 100.0 32 ............................. GTTTCTCGGTCGGCAGCCTGGACGCGACCCAG 18446 29 96.6 32 ..........................T.. GAGTGGACCGTCGCGGTGACTCCGGCGGTGCT 18385 29 100.0 32 ............................. CGCGGCTACATCTTCGCGGCCCGATCGGCCTC 18324 28 89.7 0 ...........CT..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCGCCGTCCGCGAGGTGAGAGAGGAGATCGGCCTGACCCTTCACCCGGGCAGGCTGCTGGCCGTCGACGTCCTCCCCGCGCAAAGCGACGGACAGCCCCCGCTGGTCAACTTCGTGTTCGACGGCGGCGTCCTGAGCCCGGCCGAGGCAACCGCCGTCCGACTCTGCGACGAGGAGCTGTCGGCCGTAGCCTGGTCCACTCGCCAGGAGCAGACCGCCCGACTGGCCCCTCACATGGCACGCCGTATCGACGCCTGCCTGCAGGCCGCCGAAACAGGCCACACCGCCTACCTGCAGTACGGCTACGCACCCGAAGACGGTCGCGAATAACACCAGCGCCCCGTCCCGCCCGATCGGTGATCCGGCATTCACTATCGGGTCGGTCAGGGGCGGCGTCGGTGCCCAGCGGCTATATTTGATCAGGTGTATAGCCCCGCCCAACCGCCACATTCCTCGCTTCAAAAAGTACAAGTGAGATTGTGAACCCGCAGGTCGGGAAGT # Right flank : CCCAAGCGGGAAGCAGTCGGAGGAGCACAAAACGTCCTCCCTACGACCGGTTCCGGTCTGGTCAGGGCGGCTCGCCCCAGCAAGATTGCCCGGTTAGGGGCTATTCCGTTACAAGGTGTGGACCTTGCTTCATCTCTGGACTGGAGCGAGGCTGAGCAAGCCGCAGCCGTAGGCCTTGCCCCGACCGATGCCGTCTCTAACGGCTGAGGCGAAGAGATCTGGCTCGGTGACGATCAAATGGCCGTCGTAGCGGACGCGATCGACGCTGACTTTCTGTGCCTCATCTCCGAGGTAGCTCTTGCCCTGCATCCGGAAAGCCGGAGAAGGGGCTATGTCGGGTCGGCCGTTTCTGCCCATTGGGATGACGAAGCCATTGCGTTCCCCCTGACGGATCAGCCAGTCGATCTGAGCCTCAGGGTTGCGGTGAACGACACGGCGTGGCTGATCCCGCTTTCCCTGCTCGGCTCGCTTGCTCTGCTGCTTCTCGTCGCGCTTGACGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29484-28600 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCBX01000064.1 Microbispora sp. GMKU363 strain GMKU 363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29483 29 100.0 32 ............................. CCGGGCCAGCGCCTCCCCAAGGTCGGCGGCGA 29422 29 100.0 32 ............................. GTGTGGCAGGACGACCCGTTCCGCTACGTCGA 29361 29 96.6 32 ............................C CGTAGGCGGGCACGTCGTACGGGCCGAGCTGG 29300 29 100.0 32 ............................. TTCGACCGGTACCGCATGGCCGTGGAGCTCGC 29239 29 100.0 32 ............................. GGTGCGGGCGTGTCGTACCCCTTGCCGGGGCG 29178 29 100.0 32 ............................. CTGGTAGAAGCCGTCCAAGCCGAGCCGGTCGG 29117 29 100.0 32 ............................. AACGCCGCTACCTCGGCCATGGCCGCGTGCGG 29056 29 100.0 33 ............................. GCTGACGATCACAGCCTGGATGCGGCGCGGTGA 28994 29 100.0 32 ............................. CGCTGACCGCCGCTCTCGGGGAGGCGCGGTGA 28933 29 96.6 32 ...............A............. GACGAGTACGAGATCGCCATTGTCGACGGCGG 28872 29 96.6 32 ...............A............. GCAGAGGGCGCGCCGGTCACGGACTCCCAACT 28811 29 96.6 32 ............................T CCCACGAGAGATCAGATACCAGGCCACCTCAC 28750 29 96.6 32 ......................C...... TGCCCCAAGTGTGGCGGCGAGCGCGGGAAGCC 28689 29 96.6 32 ............................C TACACCGGGGAGCTGTTCGGCCTGACGCCGGA 28628 29 89.7 0 .........................TT.T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.0 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCCGGTGGCCACAGGCGCCGACCTGCCTGAGTA # Right flank : CACCGGTTCGCACTTGGTGGGTCAGATGATCGGGGGTCGGCCTGCGCGGGTCAGTCTCAGAACAGTGGTCCAGGACATCGGCCGTCGCTGTCCGTGTCCGCCCTTGAGTCCTTCCCATAGGCCGGCGAACCAGACGCCGAGGTTTACACGGGACCGGATCCGGATGATGCTGAGCAGGGTCCAGGTCGCCAGGTAGATGGGGATCAGGGGCGCGGGCAGTCGTCGGTAGGCGAGCCAGACGCGGTTGCGAGCGACAAGGCGGTAGTACTGCACGTGCCGGGCGGGGTCGGTGGCGGGGTGGTGGATGACGATCTCTGGGGCGTACCAGCCCGTACGCCCGAGGTCCCATAGCCGCCAGCTCAGGTCGATGCCCTCATGGAAGAGGAAGAAGTGGCCCGGCCAGCCGCCCGCCTGCTCGTAGTCGGCGCGGCGGATGAGGACGACGCCTTCGGCCATGACAGTGATGGTGCCGGGCCGGGTGGCGTCGCCGGCACGCAGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //