Array 1 16897-18426 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVZ01000156.1 Pseudomonas aeruginosa isolate D, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16897 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 16957 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 17017 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 17077 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 17137 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 17197 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 17258 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 17318 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 17378 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 17438 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 17498 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 17558 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 17618 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 17678 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 17738 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 17798 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 17858 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 17918 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 17978 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18038 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 18098 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 18158 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 18218 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 18278 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 18338 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 18399 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28589-27300 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVZ01000156.1 Pseudomonas aeruginosa isolate D, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28588 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 28528 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 28469 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 28409 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 28349 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 28289 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 28229 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 28169 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 28108 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 28048 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 27988 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 27928 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 27868 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 27808 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 27748 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 27687 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 27627 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 27567 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 27507 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 27447 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 27387 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 27327 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //