Array 1 40478-39352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXW010000028.1 Escherichia coli strain 18-47-39 28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40477 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40416 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40355 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40294 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40233 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40172 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40111 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40050 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39989 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39928 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39867 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGTAATCCGT 39806 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39745 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39684 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39624 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39563 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39502 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39441 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39380 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 916-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXW010000004.1 Escherichia coli strain 18-47-39 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 915 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 854 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 793 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 732 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 671 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 610 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 549 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 488 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 427 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 366 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 305 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 244 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 183 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 122 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //