Array 1 920116-920692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019197.1 Salmonella enterica subsp. enterica serovar Oranienburg str. 0250 isolate CFSAN001285 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 920116 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 920177 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 920238 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 920299 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 920360 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 920421 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 920482 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 920543 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 920604 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 920665 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 936829-938629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019197.1 Salmonella enterica subsp. enterica serovar Oranienburg str. 0250 isolate CFSAN001285 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 936829 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 936890 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 936951 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 937012 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 937073 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 937134 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 937195 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 937257 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 937318 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 937379 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 937440 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 937501 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 937562 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 937623 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 937684 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 937745 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 937806 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 937867 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 937928 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 937989 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 938050 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 938111 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 938172 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 938233 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 938294 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 938355 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 938416 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 938477 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 938538 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 938600 29 86.2 0 TAA.........T................ | A [938624] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //