Array 1 289-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGI01000135.1 Escherichia coli strain LVSTRB97 NODE_557_length_469_cov_26.049040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 350 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 411 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 472 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTCCCCGCGCCAGCGGGGATAAACCGCCACCGTTTTCGCCCACCAGGGCGCACAACCCGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTTACACAACGGGCGAATATTTTAACGGG # Right flank : | # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200988-201948 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGI01000149.1 Escherichia coli strain LVSTRB97 NODE_1244_length_325561_cov_54.811306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 200988 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201049 29 100.0 41 ............................. NNNNNNNNNNTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201119 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 201180 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201241 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201302 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201363 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 201424 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 201485 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 201546 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 201607 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 201668 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 201729 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 201790 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201851 29 96.6 40 ............................N NNNNNNNNNTATTGCTTTCGTACAGATTTTCAGTGGTGCT 201920 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 16 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATTGACGCTTTAAACGACGACGGACGCCACATGTTCCCCGCGCCAGCGGGGATAAACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGATTTCATTAACGGCGCTCCCCATATTT # Right flank : GATACAAACGCGGTGTTTATCAATATGAATTTTGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCCGATTATCGGCATGAGCGATGCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCCTGTCAGTTGTAATCGATAACGTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTGGGGGTATGAGAGCGCCGAGCCGTTCGGGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNCGAAGAAGAAAGGGAAATAATGCGAGGAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTACGCGCCAGCAATGCTGACAGCGGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202111-202518 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGI01000149.1 Escherichia coli strain LVSTRB97 NODE_1244_length_325561_cov_54.811306, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 202111 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202172 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202233 29 93.1 39 ...........................NN NNNNNNNNCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202301 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 202362 29 93.1 38 ...........................NN NNNNNNNNGTAGGGGCAATCGAACGATTCTCTGCCGAC 202429 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 202490 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 97.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGGGGGTAGAATTATTCTTCGTGAGCGATTTATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCTGAATCCGATATTCTTCAGCACCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCGTTCCGTGCGGCAATTGGAATCACACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACAGCCTTTAGATTAGTACCTGACGACCGGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNTATTGCTTTCGTACAGATTTTCAGTGGTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGATACAAACGCGGTGTTTATCAATATGAATTTTGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCCGATTATCGGCATGAGCGATGCGGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //