Array 1 12817-13084 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLO01000075.1 Pseudoalteromonas denitrificans DSM 6059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12817 28 100.0 32 ............................ TTTTTCTCCAGCATCACCTTTTAAATGCACTA 12877 28 100.0 32 ............................ TTTGGTTTTTGCCATTGAGTTCTCTGTTTTAA 12937 28 100.0 32 ............................ GTTCGTTACAAAGCTCATTGAATTTTGCACTT 12997 28 100.0 32 ............................ TGTAACGTGCTTAATTTTACAGCAATAGCTTG 13057 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAATTAAGCCAGTACCAAATAATGTAATGTATCGAACGGTTTCTCGTAAGCAAAGTAATATGACCCAGTCAAAGTTAAATCGTTTGATTAAACGTGGTTCGATTTCACCTGATGAAGTAAAAGCTTATAAAGCAAAAATGTTTACCAAGGGGCTAGATAACCCGTATTTGGAATTAACCAGTGATTGCAACGGTCACTTTCATCGACGTTACTTTCAATTTGGTGACTTGCTTGAAAAGCCTGTAGCAGGGCAGTTCGACTTGTTTGGCTTAAGTAAACAAGCAACCGTACCTTGGTTTTAATATTATTTGTTAACTTTTTTAAACCCGTTGAATGTAACGGGTTTATTTTTAGGAGAAACGAAGGTTTACCCTAAAAAATTGCTCTTTAAAAATTTAGTTAAATATTAATGAGTTACAAGGTAGCTAATAATTTAGGTAAAAAAGCCTAAAATGCGTTAGCTGCTTGTTGTAACTTATTTTTTTGCTGATAAGCTATT # Right flank : ATCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66888-65779 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLO01000007.1 Pseudoalteromonas denitrificans DSM 6059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66887 28 100.0 32 ............................ GTTTCTAAGCGTTTAACTTTGATGGGTAGAGA 66827 28 100.0 32 ............................ ATTATGTTACGGCTAAAACAGCTTTTCAGCGC 66767 28 100.0 32 ............................ CACCTATCCGCATACGCCTGTTTTTCTAATTC 66707 28 100.0 32 ............................ TCATTAATTCATCACGCTCAACTAAACTTACA 66647 28 100.0 32 ............................ AACCAGTGATATGCAACTGAACTTTATAGTAC 66587 28 100.0 32 ............................ GCTTGGGTAGTTACTTCCTGTTATCGTTCCTG 66527 28 100.0 32 ............................ ACGTGTCAGGAAAACGAGCAAATACACATTGG 66467 28 100.0 32 ............................ GTTGCTTTATTCGATGTCACGTCAACACGCGT 66407 28 100.0 32 ............................ AGTATTAAAAAAGGTACGTGACAGATTGAAAG 66347 28 100.0 32 ............................ TGTGGAACGTGTTGTTGATTTCAAACCCATAA 66287 28 100.0 32 ............................ ATTCATTAGTGTTAGAGTGATAAACTTGCGTT 66227 28 100.0 32 ............................ ATCCACTAAAAACGAATGATTTACAAACGCAC 66167 28 100.0 32 ............................ TGTAGTGTTTACTGGCACAGTGACAACAAGTG 66107 28 100.0 32 ............................ ATATCCACATCTTGACCAGTATCACACTCACT 66047 28 100.0 33 ............................ AAGTCGGGCGCTTCTCAGTCGCCTGTTACTTTC 65986 28 100.0 32 ............................ ATCTTGCTCAATCGAAAATATATCTTCTAAAC 65926 28 100.0 32 ............................ ATTCCCCGTTTTTCTCTATTTGACTTTGCATT 65866 28 100.0 32 ............................ TATCTGTGAAGAACCATTAATTGTTTAAATTA 65806 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTAAGATGCCTATGGGTTACGATAGTTTAATTGGTGATATGGGCTCTAGTTTATCTGGAGGACAAAAGCAGCGCCTTATTTTAGCCCGCGCTTTATATAAAAAGCCTAAAATTTTATTCATGGATGAAGCTACAAGTCATTTGGATACGGCTTTAGAGTCTGATATTAACCATGCCATAAAGCGTTTAGATATGACTAGGGTGATAATTGCTCATAGAAAAGAGACCATCGCTTCAGCCGACAGAGAAATTCAGCTTTTTGTTAGCCAGCAGAAACCTGAAGCAGTTTATGAAAATTAAAAAATGTAGATTTATTTAAATCCTAGAATAAAAACGCGATTAAAAACGATTAAAGTTTCATATTAATTTTTAACCTTTTATTTTTACTTGCTCTGTAGCCCTTATAAATTAAGGGCTACATTTTAAATTAAAAAAAAGGGTGAAATCATAAAATAACTAAAAGCTCTTTAAAAATTAAAGTCTTAATGTTTTAATTACATA # Right flank : CGTCCAAAAAGCGTTTGTTATAGTGGAATATAACAAAATCTAGTTGTTGTGGATGTTTTATAGGGTTCTTAGCCTGTTATCTGTTTGTTTCATTAGACACAATGTTACATAAATATTCGATGAACAAATTATCTTCAGTATTAAATAAGTCAAATCCTATACGAGTAAAACCGTCATCTTCGACCTTCTTTACCAACCCATTCCATTGTTTTTGTCTGAATTGTCACTTTGAAGTTATATAAAAGCTGATTAAACCTATATAAAATGCCTCATTGAGAAGCAAGTTATTGTTTTAATGAAAAGCATCCACTGGTTAATGATTAAAACAAATATTATATTAATCACGATATACAGGATTAGAAAGTATGGGTCGGTGACTTAGTGTGAGCGCATCTTCTAAATGTGATAGTGCAAAGTGAGCATAGTGTATTGTTTGTCGATTTTTGCATAACTTTAAATATGCAGTAATGTAACTTTGTTCCCAAAGCTGATAAAGTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //