Array 1 1589-145 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUW01000031.1 Bifidobacterium pseudolongum subsp. globosum strain 2003B Contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1588 33 97.0 34 ....T............................ CCCTTTTCTGTTGGATCCACTCGTAATGCATGTT 1521 33 97.0 34 ....T............................ TTGACGAGGAAAGCACAGCGGCCGAACTGCGCCG 1454 33 97.0 35 ....T............................ ACGATTGCGGAAGAGCGCGACATCGAACTGCGCAT 1386 33 97.0 34 ....T............................ GGTGTCGATAAGATCAGCAACGCGATCAACAAGT 1319 33 97.0 33 ....T............................ AATGTCATAATGACCTCCCTTTTTGGTTTTGGT 1253 33 100.0 33 ................................. AAACTGTGCAACGTCACTTGGGACATGGGGTAC 1187 33 100.0 35 ................................. GCTGATGATCGTGAGGTTCGGCACTGTATACAGCC 1119 33 100.0 34 ................................. TCCACGAACGTGCGCCCAGGATTGAGCACACCAC 1052 33 100.0 34 ................................. AACGTCTACGACACGGACGGTAATGTTACCGTCA 985 33 100.0 34 ................................. AAGGAGGACTTCGGCCATATCATCACGTATCCAC 918 33 100.0 35 ................................. CTGCAGGACCCCGAACGGTTCCTCGCCCCGGACGA 850 33 100.0 34 ................................. CATGAACCCCTACCAGCCACTCGGCTACACGTAC 783 33 100.0 33 ................................. TGCCACGACGAGGACGCCGTGCGCCATACGTTT 717 33 100.0 34 ................................. ACTTCCCAACGGCAACGTGGTCATCTACGGCAAT 650 33 100.0 34 ................................. ATTTGGTCGTACCATGATCACTCCGTCTTGAACT 583 33 100.0 34 ................................. TTTGGAGTTGAGTGCGGATGCTCCGCACCGTTTC 516 33 100.0 36 ................................. TCGGAAACCGCTCGCTTGGTCATGCCTTTGTCGTGG 447 33 100.0 35 ................................. TCGGCCGGTGCGGGGACGCATGGGGGCAGGTGACA 379 33 100.0 32 ................................. ACCCTCCTGCACTGCCGCCTGTCCCCGTTCGG 314 33 100.0 36 ................................. CTCCTGCGGTTGGGGTGTTTCCACCGTGGGTTGCGG 245 33 100.0 35 ................................. AGGCAACGCTCCCGCATCCACCTCGACAGTCACCA 177 33 81.8 0 .......................ATT...TC.A | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 98.5 34 GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : CAAACCAAGGAAACGTTGGGGGTCGAACACGATAAACTCGGGTTCAGGCCGTGTTTCCTCATTCAATTTTTCTATCACACAAGCAATGATGAAGCACGGCCCTTACACACTAACTTGAGAAGAGCCCGTTGACCGTGTTATCGCCGAGCTTGGCCCG # Right flank : AGTTGGGTTGTACGGCGTCGTCACTTTTTCTGGACGGTGTCGGCGCTTGTTTTGGACGGTGTCGTCGGTTTGGGGTTCCTTCGGTTTTGTTGGTTTGGTTATTTCATGAGTGAGTGTGTGTTGCGGTAGGACTCGCCGTGGAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 1569-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUW01000017.1 Bifidobacterium pseudolongum subsp. globosum strain 2003B Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1568 33 100.0 34 ................................. ACCTGACGAGTTCCGTTGGGTGAACCTGTCGTAT 1501 33 100.0 34 ................................. AATACTTTATCCGCTATGAATGGCGTCGTATTGG 1434 33 100.0 33 ................................. CTGTGTACCCTCACCAGTCCAAAACAGAATCGC 1368 33 100.0 33 ................................. TGCAATGTCAATTCAACGTAGCTATATGGGTAG 1302 33 100.0 34 ................................. GGTATCAATGGGGTGCAGGCCATCCTCACCACGA 1235 33 100.0 34 ................................. ATGTTCGATTCGCTATCTTGCATCAATCCGTCTC 1168 33 100.0 34 ................................. GAGCCAGTTAGCCATCGTCGGTGTCCAGCGGGCG 1101 33 100.0 34 ................................. AAAGTGGTTCGTGGTATACCGACTTCACGAGCGA 1034 33 100.0 34 ................................. CATCGATGTGGAGACCACGGTGGACAACGTCAAC 967 33 100.0 33 ................................. CCCACCGCCACCACCGCCACGCTTCATGAGCTG 901 33 100.0 33 ................................. GGGTGCGAGCTCGTGCAGGGCCTCGGCTCCTAC 835 33 100.0 34 ................................. ACGGCGACCTACACCGGCCTCGGCCAAGCACAGC 768 33 100.0 34 ................................. CTTCCACATGTCGGAATTGTCGCCAAGCAGATAC 701 33 100.0 35 ................................. TCGCCCCATGTGACGCGATGGTTGCGGGTACGCAC 633 33 100.0 32 ................................. TCGTAAGTAACAGGGGCCGACATCGACCCCTG 568 33 100.0 33 ................................. AGGGTGAAGCCGCCGACTTCGCAGAACTGCGTC 502 33 100.0 34 ................................. AGGGCGGCAAATACCATACGGTCACACCCAGCGC 435 33 100.0 33 ................................. TCCAGCCACAGCCCATATGGTGTGGCGTACTTG 369 33 100.0 34 ................................. TTTGAGCGTGTTGGTCGAGTTTTCACTCCAGCTG 302 33 100.0 34 ................................. ACGAGTCTGCTTTCGTCGGCGCGGATCGCGCCCT 235 33 100.0 35 ................................. GTGTACGACGGCTCACCTTGGGTGAATCTCGACCA 167 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 22 33 100.0 34 GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : ACGTCGCCAAGACATGCATGCGATTCGGGCAACGGGTTCAGAATAGTGTATTCGAATGCTCGATTGTGCCAGCTGACTACTTGATGCTGGTTTCAGATTTGCTGGAGATCATCGATAGAGAGAAAGATAATCTGCGCATCTACAAACTTGGCAAGAATTATGCAAGTAAGATTGAGAGTTATGGGCGCAATCTGCATATGCCATTCGATGACGTCATGATGATTTAAGCATAGACACTTATGGTTGAGGGGGCGTAGTGGTGCGAAGGGGATGCTGTCATGTTTTCTCCGTAGGCTCGCACTGAAAGCGCTAGATCTATACCAGAGATTTCAACCGTATTGAGCGGATGTTGTTTGATAATTCAATAGTGTTTTCCACAATCCGGATTCAGTTCTGAGATATAGTAGTTAAGCATCATTCAGTATGAGTTTTCTGCGATAGAATTCAGACTGAACGTGAGCAAAGTGTCTGGAATATGGATCATTTTGTTCATTTTTGAG # Right flank : TTCCGTTGACCGGCTCTTCTCAGGTTAGTGTGTAAGGATGTCTTTGAGTTGGCTGCTGTGGATGAGGCATCGTTGGATGTAGCTGGTGGTGTTGGCGAAGCCCATGGCGTTGCCGCGCAGGGTCTCGAGCCTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //