Array 1 5906-6271 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIPZ010000001.1 Streptococcus pyogenes strain NS5630, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      5906	    36	  91.7	    30	....ACT.............................	TTATAGACGTGTCCTTAATCTGATCAAGGT	
      5972	    36	 100.0	    30	....................................	ACAAAACAAAGTAACCTTGATGGCTATTTT	
      6038	    36	 100.0	    30	....................................	CGCTGCTGGCTGCATGCTAATAACACGGCT	
      6104	    36	 100.0	    30	....................................	TGGTCTAACTGCGTCTGGTCTGTGAATGAT	
      6170	    36	 100.0	    30	....................................	GATGCCGTTGACATCACCAGTATCCCCTTT	
      6236	    36	  88.9	     0	.............................T.C.TT.	|                             	
==========	======	======	======	====================================	==============================	==================
         6	    36	  96.8	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AAAATATTTAATGTATCAGTAGATGATTTTTTACCAAAGGACTGACAATATCTAATTTTAAATTTACAATATAATTAATGACATAGTAGCTTAGCTATGAGGGTTGAGAAATATGGTAGTAATCCATAAATTAAACAGACTGCAGTTTTTGCCAGTCTGTTTTTTTAGTCCATTAAACCAGACTAAAACAAAAAAGTCCTTTTTAAGGGACTTTTTACGAATAATAAGATAAGGAGGATTTACATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCACAGCAGACACAGTAGCGATCGTGCGTAAAAACGGATTGATATTTGATTATGTGTTGCCGCACGAGTCTGTGAGATCGTGTGAGATTGTGATCGAGGAGAGGGTGGCGGAGGTGATGGTGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTAGTCCAATCTATTGATATAAAGCCTTTTTA
# Right flank :  CAACATTGCCGATGATAACTTGAGAAAGAGGGTTCATACCAGCAGTCGGATACCTTCCTATTTTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCTTAAGATTTACGTTTAAGCGATTCGAGATAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAG

# Questionable array : NO	 Score: 6.10
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [4-4] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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