Array 1 34255-31649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JIDL01000026.1 Vibrio cholerae strain 1157-74 DN38.contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34254 28 100.0 32 ............................ TTCTTAGCTTGCTTCTCCCACGTGGTCAGCTT 34194 28 100.0 32 ............................ TCCAGCATCTCCCGCCGAGCTTGTTTATATTC 34134 28 100.0 32 ............................ GAAAGCCCTTCGGTAGCGAAAGGAAAGACTCT 34074 28 100.0 32 ............................ TCAATCGAGGGGTTTTTGTTATGTGACTAATT 34014 28 100.0 32 ............................ ATTATATATCAACGCTTTAAGCCACTTTTTGT 33954 28 100.0 32 ............................ ATTTTAATTTCTTGCTTGTCGGTCAATCCCAA 33894 28 100.0 32 ............................ TCTCGGTCGCTCGGTAAATCCCAAGCGCCTAC 33834 28 100.0 32 ............................ TTTTTCATTGTGCTTAGGTAGGCAAAGGAAGT 33774 28 100.0 32 ............................ TTTACGGCGCGTATCGACGCGGAGGACTGGCA 33714 28 100.0 31 ............................ TCTTCCCACTGGATTCTCATTACTTCTTTTT 33655 28 100.0 32 ............................ TTTCGGGCATTGGGTTGAGCACATCTCAACTT 33595 28 100.0 32 ............................ TGCATTCGGCACAGTTCTAGCGTTGTCATGCC 33535 28 100.0 32 ............................ TCTGTATCGACTAGAGCGACTTTAAGCGCGGG 33475 28 100.0 32 ............................ ACATAACGGCGTAACATTGATTCGCGCAAAAG 33415 28 100.0 32 ............................ TAAAAGCAGAAGAAATGGGGCGTTTGGGTGAC 33355 28 100.0 32 ............................ TCAAATGTTCCATCAGGCTTTTCGATGCTGGA 33295 28 100.0 32 ............................ GTTACTTGGCGAACCATTACCAGCTACGCGCT 33235 28 100.0 32 ............................ TGAAGCTCTTTTTCACTTCGCTGTGCAAATAA 33175 28 100.0 32 ............................ TCAATACAGCGCATTAGCTAGCCTCCGATACT 33115 28 100.0 32 ............................ TATCAGCTAGCACTTAACCGCGCTGAAACTGC 33055 28 100.0 32 ............................ GTAATGGCTTTGCCAATCCGGCCTTTATTTTG 32995 28 100.0 32 ............................ TTTCAGGCTGTTGCGGGTAAACAGGCGCTCAT 32935 28 100.0 32 ............................ TCTGTCTTCATTGTTATTCTCATGGCAACTTT 32875 28 100.0 32 ............................ TGAAAGCTAGAAAGCGGAAGAGGCGCGCCCAG 32815 28 100.0 32 ............................ TCAGTTTGACGGAGAAGCCAAATGAATAACGA 32755 28 100.0 32 ............................ TTTGGTTCGTTCCGCACGATAGCGAAACTTAA 32695 28 100.0 32 ............................ TGCTTGCTACTTATCGAGCAAAAACAGGTCTG 32635 28 100.0 32 ............................ TCACATGAGGCTTATTTCGTTCAGCTTATGAT 32575 28 100.0 32 ............................ TTAATTCGATAGATCAACTCATCAGGGTTAAT 32515 28 100.0 32 ............................ TGAAATAAATTTAATTGACCTCTTTTATAGTC 32455 28 100.0 32 ............................ TTTCTTAGTGTCTAACTCGACTACTGACGGCG 32395 28 100.0 32 ............................ TTGAGGTGATGAAGTCTAGAAAGTCAGCGACT 32335 28 100.0 31 ............................ TAAAATAGAGCAGCAAAAATAAACCAAACAA 32276 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 32216 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 32156 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 32096 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 32036 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 31976 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 31916 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 31856 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 31796 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 31736 28 96.4 32 ...........T................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 31676 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //