Array 1 15012-15688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPS01000116.1 Leptospira interrogans strain 56642 Contig116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 15012 36 97.2 34 .....................G.............. TAAGCATTCAGACGAACCGTATCGATAGATCTAT 15082 36 97.2 37 .....................G.............. GCTATAGCGGTTTTGGTTTCTTTTTTTATTTTTTGGC 15155 36 97.2 35 .....................G.............. TAAATGAATCTGATACAGTAGTCATAATTACAGAT 15226 36 100.0 37 .................................... GGACTTACGCTTGAGGCGAAGATGGAGGAATCCATCG 15299 36 100.0 34 .................................... GCGGATAGTATTATCTTAGCAACAGCACGTCAAT 15369 36 100.0 35 .................................... CCGTTCTGATTTTTTCTTTTCCTTCCTTTTGTTAT 15440 36 100.0 38 .................................... GACTGATCACACTTGGAACCCGGTTACAGGATGTACGA 15514 36 100.0 31 .................................... ATTTTCAGATTTCCTCAAGTCCTACAGGGGT 15581 36 100.0 35 .................................... AACTCCGACCGCGATCACATACGGAGTCCAAGCCC 15652 36 86.1 0 .....................G........T..ATG | A [15680] ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 97.8 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : AGGAGAAGATCTGTTTGGCCCAAATTGTTTCACACCAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 12281-12459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPS01000056.1 Leptospira interrogans strain 56642 Contig056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 12281 36 97.2 36 ............................G....... CAAATTTCCCACGCGTGGGAAATTTGGCTCATTCGA 12353 36 100.0 35 .................................... CAAATGTAAACTCAGATTTACATTTGATTGAAGCG 12424 36 94.4 0 ......................A.....A....... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 97.2 36 GTTTCTTTCTCTTATTCAAGAGGAAGTGCATTGAAA # Left flank : ATAGAGAACTTCCCCAATTGTTCTTAAAACTAAAAACTTTGTAAATGTTTACTGTTAAGTCGGATTGTTTGTTGAGTTTAGATTCAATTGTTTGTGAATTGATCTCTTTTAAAATCTCTAAAAGTTGTACAAACCAAAACACGTTTGTTAAAAATTTTAATTTGAGATGACTTCTAAAAAATTCTTTTGTTCCTTTTCCAAAAATTTCAGTTAGACGAACTTTGCCTCATGGATAGTCAGTCTTTCATCAATCTATCCTAAAACCCTGTTATAAGTTTGTCTTTGATAAGCCGATCTTTTAGAATGAATTGTTTTTTGCGAACCTGTTTCTCCCGGTAAATTACGGACCTTTCGCGCTCTTGCATGGATTCGTTGTTTGGCGATGTAACGGTTCCGCTTAACAATTGTGTAATATGGTAAAAATAGGTTCGCGATTATTATGTTTAGAAAGCTTAATAGAGCATTTTATAATACATTATTTTCAACCCTATTGAGCCGCC # Right flank : ATGTCGGTAAAGTGGCCAAAGGCGAAATGGAAGTTCGTTTTTTCCTCTTACTCAACATGAGTTCCTACAATTTCAGAATTTGTTCGTAAAATTGTGATTTGCAGTAGTTCCCACATCATTTTATAGAGGCTTTGTGGTAGTTCCCACAAATCAGAGCTTGTCCCAAAACCTCAAAGAATTTTACGCAATAATTCTTTAGAAATTTTTAATAAAATGCAGTAGCTCCTAGAGATAAGTTCTCATTTGGCAATTTGCGAGCTTTCGAGTAGTTCTAATGTCGTTCCATTTTCGTAGTAGTTCCCACAAATTAAGTCACATTGTGAATATAAATTTTAAATTCAATTTTTGTAAAGTTTTTCGAACTAAAAAGTTTTACTGATTTTTATAAAATTAAATACCGTGAATTTTTATCCTAAAACCCTGTTATACGGTTTTGAATGGATTTTATTTTAGAAAAATCATACATCTAAATCACGTTTACTTTCATTCAAATACAATGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTATTCAAGAGGAAGTGCATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //