Array 1 188645-186907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUQ010000083.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H5-Mar NODE_94_length_340698_cov_61.542576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188644 29 100.0 32 ............................. GGTCCGAATACGCATTGAGAACAATATAGAGC 188583 29 100.0 32 ............................. TCACTCATTTGTCCTCCATTGCTCACCGAATC 188522 29 100.0 32 ............................. CTACTGAAATATAATGGTACGCCCTGTAGGAT 188461 29 100.0 32 ............................. AGATGAATATGTCTCAGTCCCAGCTGGCAACA 188400 29 100.0 32 ............................. AGAAATCAGGTCGAGTGAGTACGAACCTTATT 188339 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGGCCGTATT 188278 29 100.0 32 ............................. CGTAGAGGGATATTCCACAGGCGAACGCACAA 188217 29 100.0 32 ............................. GCGAGTAACAAAGGTTGAAATGTGCTCATGAT 188156 29 96.6 32 ............T................ TCGCTTGCGCTCCGAATGGGGCGCACACTTTC 188095 29 100.0 32 ............................. TTCGTTCTAAACAGAGATGGTTGGTTAGATAT 188034 29 100.0 32 ............................. AAACCGTTAGACGTGGTATAGCCAGGGTTTGC 187973 29 100.0 32 ............................. CAAGGTTTCTGAAAATGAGCGCGTTTCCGTTC 187912 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 187851 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 187790 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 187729 29 100.0 32 ............................. CCGCAACTAAGTTCTATGTGGATAGTACAGTT 187668 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 187607 29 100.0 32 ............................. AATAGCACGCCTGCCGTTGTTTCCCGCGTCTT 187546 29 100.0 32 ............................. GGAGCACGGTAAACTACTGGCGCAAGGGCCGC 187485 29 100.0 32 ............................. CACCCCCTCGATCCATAACCCCCTTTGTATCC 187424 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 187363 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 187302 29 100.0 32 ............................. CCAAAAGAATTCTCAGCATATCTTTAAGTATT 187241 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 187180 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 187119 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 187058 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 186997 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 186936 29 89.7 0 A........T..T................ | A [186909] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCTGTATCAGCCGGACTCCCGTCCCAGCCTTATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCGTCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198271-197877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDUQ010000083.1 Salmonella enterica subsp. enterica serovar Brunei strain FW-H5-Mar NODE_94_length_340698_cov_61.542576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198270 29 100.0 32 ............................. CCCGCGCACCTGGCATCGTTCACGTTGAACAG 198209 29 100.0 32 ............................. CCTTCTTTCGTATGCACGAACACCCATTTATG 198148 29 100.0 32 ............................. GTCACGAACGAACCAGGCAATCATCGCGCACA 198087 29 100.0 32 ............................. CCGGTTTGATAATTATAAATCAATTGGCAGGA 198026 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 197965 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 197904 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //