Array 1 25802-24644 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAHC01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 20763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25801 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 25735 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 25669 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 25603 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 25537 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25471 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 25405 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25339 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25273 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25207 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25141 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25075 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25009 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 24943 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 24877 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 24811 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 24745 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 24679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //