Array 1 15324-14813 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMW01000014.1 Zymomonas mobilis subsp. mobilis strain NBRC 13756 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15323 28 100.0 34 ............................ GGCTTACGAATTTTGGACAGGAGACCGGCGTAAT 15261 28 100.0 32 ............................ TATCCAGTCAGCGACAATTCCAGCTGATTTAC 15201 28 100.0 32 ............................ TGATAAAAAATGGTTCTTACCGAGTGACTCAC 15141 28 100.0 33 ............................ ACAGCTTCTCGGCATGGTGCCGCAGAACGGGTC 15080 28 96.4 33 ........T................... AGTCGATCAGACCAGCTCCGACATCAAGATGCA 15019 28 100.0 32 ............................ AGCTGCCCGACAGCGAATGCCGATATATTTAT 14959 28 100.0 32 ............................ GCATTTGTCTTTTCCAATTTTGCTATAGCTTG 14899 28 100.0 32 ............................ TGATTGATCTGAAGGTATTGTCCGACTTTTAC 14839 27 78.6 0 .............T...T..G..-.T.C | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCTGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGGTTTAAAAGAGGGGGTCCGAAAAAAGGCTCCCTTTTTTATTGAGGATTATTGACGAGAAGTAAGTTGTAAGCGGCCAATTTTAGGATTTTTTCTATTCTAAAGGTCGAGATTAAAAGGTCTATTCCTTTTGCAGATGAGACAGTTAGAATGAGGCCTTTATTGGTCAATCGGAATAATTATGATGGGTGGAATCTGGGGTAAATAAATAACCTCGTTTCATTCTTGCTATACTTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTGCATTTGACCCTCTTTTTTAGGCATGTAAAAAAATCCTGTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCCATTTTTGCCCGATATGCCTTGCATTTAGGGGGATTTTTAATTATTTGCTCTA # Right flank : TTAATTTATGTGTTGTTCTGTTTCATGGTTGGGGGGTGTTTTATCGGAGGCTATTCGGTTCTCAAAATATGTCGCCGGCACTTCTTTTTCTTCTCTGTCTTTTTTTTAGCTATTCCGACCAGAATAAAATCATCTGTAGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTCATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 376-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMW01000025.1 Zymomonas mobilis subsp. mobilis strain NBRC 13756 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 376 28 100.0 33 ............................ CTGATCGGCAATATTCGACGGATCAACAGGCTG 437 28 100.0 32 ............................ CGCCATAGAATTGCAGAATTTGTCGGACACAA 497 28 100.0 32 ............................ TGAATACTGTCAAAGCTAACGGATTGAAATCA 557 28 85.7 0 .....................A.CA..T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCGACATCAGGAGAAATAGCCAATATATTTCTAGGGTATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGACCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAATAACTTAAAAGCAAGCCTATTTTTTAGGGTTATTTTGCCTATTTGGCCTAATATCCCTTTATTTTAGGGATAATTTTATAAATCTCTTCTAG # Right flank : TTATCAAAACCGATGCCAATCATACCCTTAGATGCGACCTTCGAGACAAAAACATTTAAAAACAATTACTTAACCACAAAAACATTAAACCCTTAGAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTACCGGCTGAGGGAAAACGATTTCACCCTGCCGATATCTCCTAAATTTATCCCCCGAATAAATACATCCTGCTATAATAGGACTGTTGTCAGCTACGCCCTCGACACAACCGTTTTATATCAAAACATCCTTTTCGCTTTATCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGACGCGAAACCGCTATATTACGCCTTCGCAGACTGGCGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17751-17544 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMW01000006.1 Zymomonas mobilis subsp. mobilis strain NBRC 13756 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17750 28 100.0 32 ............................ ATAAATTGCAAGCTGATAGTGTTGAACAGATT 17690 28 100.0 32 ............................ AGCATCGCGCCACAGAAGAAGATCAAGCGTGT 17630 28 100.0 31 ............................ ACTGACAAACTGGAAATGCCGAACGCGACAA 17571 28 75.0 0 .............G...T..T...AGGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGCTGTATATTTTTGCAGCATAACCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCGGCCTTTGTAAGCCATTTTCACCACGAATAATCAGCGATATCCTATTTTCTGACATTGGTAGATTGTCCTCATCCTTATAGCCGAGTTAAGGCATTTAGGTGGATGTGTTTAATTTTCAGCCTTAGCATAGCGAGGATAGAGAAGAATAAAGGCTATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAACGGGGTGTATTAGCCTTGCGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTTAATTCAATATGTTACCTATAGGCCTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTATTGCCTCTA # Right flank : CTTTCACGTTATTTAGAAAATAAGATACACATCCTTACTCCAATAAAAAGAGCATAGGCTGAATGCCTCTATCGTCAATTTTAGGAAGTTCTTAGGAATGGTTTTCTTTATAGTCGTGGCAACAATTGTTATCGGCGGTCTGTTTTACTATTTAGAGCCTTCTTTGCAGCAACAGAAACAAAAGATCAAAGCGCATATAAGGAGGTTAATGAGGCCTAGCTATATGATCGCTGGATTCCTGTGTCTTTTAGCGGCTGTGATCACAGCTTTTGGCCTTGTTCACAGCCTTTCTTGGGGGCAAATGGGTAAGATATCTTTATTATCGGTTACAGGAATTTACTTTTTGCATATGGCCTATCGCCTCCCAAGATAGAGAGATTTATGCGTTGCCGGATAGGTGGGGGTAAAATTCAGGTGGTTTTAAAGAGGGCATGAAGCCCTCTTTTTTTAAGGTTTTTATTGAAAAAACGGTTTATTTTTTATTTAGGATTAGTCTTCTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //