Array 1 139863-139162 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVM01000004.1 Escherichia coli O86 strain JE86-ST04 JE86-ST04_contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139862 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 139801 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 139740 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 139679 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 139618 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 139557 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 139496 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 139435 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 139374 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 139312 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 139251 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 139190 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 157040-155364 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHVM01000004.1 Escherichia coli O86 strain JE86-ST04 JE86-ST04_contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157039 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 156978 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 156917 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 156856 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 156795 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 156734 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 156673 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 156612 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 156551 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 156490 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 156429 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 156368 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 156307 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 156246 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 156185 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 156124 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 156063 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 156002 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 155941 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 155880 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 155819 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 155758 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 155697 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 155636 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 155575 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 155514 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 155453 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 155392 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //