Array 1 5053-2218 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLP01000006.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 236 NODE_6_length_26218_cov_0.651911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5052 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 4991 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 4930 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 4869 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 4808 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 4747 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 4686 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 4625 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 4564 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 4503 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 4442 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 4381 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 4320 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 4259 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 4197 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 4136 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 4075 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 4014 29 100.0 32 ............................. ATCGTGTTTATAAAACAACGGTCAATACTCGC 3953 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 3892 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 3831 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 3770 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 3709 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 3648 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 3587 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 3526 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 3465 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 3404 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 3343 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 3282 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 3221 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 3160 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 3099 29 96.6 32 ...........A................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 3038 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 2977 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 2916 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 2855 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 2794 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 2733 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 2672 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 2611 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 2550 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 2489 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 2428 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 2367 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 2306 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 2245 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATGGAGGCGCTGGATGAACTGTTAGCCAAGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 427-3878 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLP01000070.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 236 NODE_70_length_10116_cov_0.424567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 427 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 488 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 549 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 610 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 671 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 732 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 793 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 855 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 917 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 978 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1039 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1100 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1161 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1222 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1283 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1344 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1406 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1467 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1528 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1589 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1650 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1711 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 1772 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 1834 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 1895 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 1956 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2017 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 2078 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 2139 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 2200 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 2261 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 2322 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 2383 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 2444 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 2505 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 2566 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 2627 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 2688 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 2749 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 2810 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 2871 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 2932 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 2993 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 3054 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 3115 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 3176 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 3237 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 3298 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 3359 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 3420 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 3481 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 3542 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 3604 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 3665 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 3726 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 3788 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3849 29 96.6 0 A............................ | A [3875] ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //