Array 1 923075-921652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054041.1 Listeria monocytogenes strain F6212 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 923074 36 100.0 30 .................................... TGCCATCGGGCCACTATTGATGGGGATAGG 923008 36 100.0 30 .................................... TTCTGGGGACTTGTACTTTTCTTAGCAGTA 922942 36 100.0 30 .................................... TAGCCGTCCTCTTCTAAGTCAACCTCCTCA 922876 36 100.0 30 .................................... CAATAGAAAAAAGCTTCTTAGCTGATACGC 922810 36 100.0 30 .................................... GAACCTAGGTGACGAACCTAACGGAAAATT 922744 36 100.0 30 .................................... AATGCTTTGTGTGTTTCACTATTGTAATCA 922678 36 100.0 30 .................................... ATCCACAAATGTGAGCATTCCTTCTAATGC 922612 36 100.0 30 .................................... AGTGGACAAGGCGACTATTACGTTAAAAGT 922546 36 100.0 30 .................................... TCGCGAATCGGACACTATGCTGCGTCTTTC 922480 36 100.0 30 .................................... TTGCAGCTAAGAATAACAGAATGATGTTGC 922414 36 100.0 30 .................................... TGCAAACTTAAGATTATCATTGTCGGAGGC 922348 36 100.0 30 .................................... CCATGTCAATATGAAAGCCGTGCAAGAGGA 922282 36 100.0 30 .................................... TCAGAAATAAATATAATTTAGGTGAAGACG 922216 36 100.0 30 .................................... TATTATTTTTGTTTATTAGTTTATTGAATG 922150 36 100.0 31 .................................... CAGCTTTCTTGCGCGCTACTCATTTTCTTAT 922083 36 100.0 30 .................................... ATTCATGTCACAGCGACAGACAAAACGAGC 922017 36 100.0 30 .................................... CATTCGTTCTGTGCGTTCATACTTACATCG 921951 36 100.0 30 .................................... CTGCTTCTACAAACCCAAACAATAAGCCTA 921885 36 100.0 30 .................................... AAGGTTTCGGGAATAGTAACCCCAACTCGA 921819 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 921753 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 921687 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGAATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCAATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1679161-1679701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054041.1 Listeria monocytogenes strain F6212 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1679161 29 100.0 34 ............................. CCTATTAATTTCGTGTTTTTACTGCTTAACATTT 1679224 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 1679287 29 100.0 36 ............................. CATGATTTCTTTGTCGTTCATAATAACGTATTGATT 1679352 29 100.0 35 ............................. GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 1679416 29 100.0 35 ............................. GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 1679480 29 96.6 35 ..........T.................. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 1679544 29 100.0 36 ............................. GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA 1679609 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 1679673 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //