Array 1 114518-105661 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037981.1 Rathayibacter toxicus strain SA19-06 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 114517 29 96.6 36 ............................G AGGGCGCGTTCGCCGGTCAGGCGTGGGAGGCTGTCA 114452 29 96.6 33 ............................G CCCCACCAATAATACCGGCTATGCCACCAAAAA 114390 29 96.6 33 ............................A GGGTTTTGCTTCCTTTTATTGATTTTGCTTTTA 114328 29 96.6 32 ............................T GTGATGAGGTGCGAACCCTCCTAGAGGCTATA 114267 29 100.0 32 ............................. CGGTCGGGTCGTTAACCCCGCGGCCCGGCCGG 114206 29 100.0 33 ............................. GCTAGATTGCGTGATAGGATCACCTCATGCCCA 114144 29 100.0 33 ............................. CGCATGGGATTCTTTTGTTAGGCTATATGAGAA 114082 29 100.0 32 ............................. ATTACCACGCTGACACCCCATGTCAAGAGGTT 114021 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 113960 29 100.0 32 ............................. AAGCGTGCCATGCTTGTCAACAACAAGACCCC 113899 29 96.6 32 ............................G TGGGGTCACGAGCTCACATCCGAAAACACGAG 113838 29 96.6 32 ............................T AGCGGCCCGAGTACGGTTGTCCATACCGCGGA 113777 29 100.0 32 ............................. CAGAAGATGGTGTTATCTACATCCCACTAGAG 113716 29 96.6 32 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACAT 113655 29 96.6 32 ............................A GCATCCGCGGGAGGACGAGACAGACCGTTACT 113594 29 100.0 32 ............................. CTTACCCGCGATTCCGCTGGCCCTGCCGGTAT 113533 29 100.0 32 ............................. ACGGATAGCCTCCTGCCACGGCTTCACCCTTT 113472 29 96.6 32 ............................T TCATTACTGCCGGTGGTTCGGATCCAGATCCG 113411 29 100.0 32 ............................. GCTTTAGGGGCCGCGAAAGCGCCAATAAACGC 113350 29 100.0 32 ............................. GCCATCGCTGCGGGTATACAGTGGCTTAATGG 113289 29 100.0 32 ............................. ATTTACTGGCAATCTCCGCGACATCGGGCTGG 113228 29 100.0 33 ............................. CAACCCCGACCATCGATAACCTCGCCGTCAGGA 113166 29 96.6 32 ............................A TTCTTCTTCGCGGCCAGGTTGTCCCCGCGGGA 113105 29 96.6 33 ............................G CTTCGCAATATGACAAAGGCCAGCTAGCTAAGG 113043 29 100.0 32 ............................. GATGAAATAGCATCCCAGTTATTGGCAGTTAT 112982 29 96.6 33 ............................T AACTATGCCTATATGGTCAGCGATTACCTGCAA 112920 29 100.0 32 ............................. TGAGAAGCTTGCTGGCCGCAAACGCCTGATTG 112859 29 96.6 33 ............................T GCTATTAACGCGCAGTCTAGGAAAACCCACTGC 112797 29 100.0 33 ............................. TTTCGCCCCAGGGGATCATCGGCAATCCTCGGA 112735 29 100.0 32 ............................. CTGCGACGACGCAGGGTAAGCAGAAAGCGTAT 112674 29 96.6 33 ............................T CTGCGGACAGGATGTCTTATTTTGAGTGGTCTA 112612 29 96.6 32 ............................A GGATTCTTCCGCGACGGCTTATATGATTTTTA 112551 29 96.6 32 ............................T ATCATCGAAAAAGAAAACAATACACCCGAATA 112490 29 100.0 32 ............................. TTCTGAGGTCCCCGGTGATTCGAAAAGCGTGC 112429 29 96.6 33 ............................T TGATGTTTGCGCCGCGAGATTGTTGGCGAAACC 112367 29 96.6 32 ............................T GGGGCGACCGCATTAAACGGAAATACCAACAT 112306 29 96.6 33 ............................T AGCGTGGCTTCTCTTATCCGTCAGCATCAAGAG 112244 29 100.0 33 ............................. AGTCGCAGGATACTCCGTCGCTGGCCCCAACGG 112182 29 96.6 32 ............................G CGGGTTAAACCGTGGCAGGAGGCTATCCGTGT 112121 29 100.0 32 ............................. GAAAGCGGCGCCTATACGCTTAAGTGCATCGA 112060 29 96.6 34 ............................T GAGTTGCTGGCCCCTGATGGTTCTCCGCTGCTTA 111997 29 100.0 33 ............................. TGTCCAGCAACAGCGTCGCCGACTACTGTCTGA 111935 29 100.0 32 ............................. CATCAGGGGCCAACAACTCGTTCTCCATAGGA 111874 29 96.6 33 ............................G TACCAGTAATACGGTACCCGGCGAAAGGGTTAA 111812 29 100.0 32 ............................. GACCTCCCGCGCTTCTTCAGGCCAACCTTTTT 111751 29 96.6 32 ............................G TAATCTCGCGCGGCGGAGTCCAGCCAGTCCAC 111690 29 96.6 32 ............................T GCGTTTTTGTTCGAGGATGTGAGCGCGCCAGA 111629 29 100.0 32 ............................. CACGGGGACGGTGATGCGACGCGCACGAAGCA 111568 29 96.6 32 ............................G TTGTATCGCTGCGTTAATGATCAGCGGGAGCG 111507 29 100.0 32 ............................. TTTATATTTAGACATTATTGTGGCCCTTAATC 111446 29 96.6 32 ............................A TACGGGGAAACACGCACGTTTACAGCCACACA 111385 29 100.0 32 ............................. AGAATTCAATGATCCGGTAAAGAAGTTGGCGA 111324 29 96.6 33 ............................T GATTTCGGCGGCGGCCGTATCGTCATTGATGGC 111262 29 96.6 32 ............................A TGGTTCCTAGTGATGGTGTTGCGCCCTTCTCG 111201 29 100.0 32 ............................. ATATGTGACGCCTAAAATTGGTGTTTTACTGG 111140 29 96.6 32 ............................A TGAAGCGGGGCAGCCTCGCCCCTACCGGCAGT 111079 29 96.6 32 ............................A CTCAGTATTAAAGTCTTGTATTCACTGATCAT 111018 29 96.6 32 ............................T CAGCATCCCCAGCTTTATCCCTATAGATCTCC 110957 29 100.0 32 ............................. ACATCCGGTCGCGATTCAAATAGGTGATTTGG 110896 29 100.0 32 ............................. CGTCTCGTCACAACCCGCCGCAATCACCGACG 110835 29 100.0 32 ............................. CGGGACCTCTCTGCGTCGCGTTAGAGTAAACG 110774 29 96.6 32 ............................G CCAGGATGGAGCGTCGTCCCGCTGACCCGATC 110713 29 100.0 32 ............................. GCCACGACCATATCGGCTTCCGATCCGGCACC 110652 29 96.6 33 ............................A AAGCTTCAGAAGGCGCTGGAATTTGGCGATAGA 110590 29 96.6 32 ............................T AACCTTAAAAATGGCTGTGCAGAACATGTGCA 110529 29 96.6 32 ............................G TGGTGGAGAGGTATGAGGGCGGCGCGACTCTC 110468 29 100.0 32 ............................. ATCATTACCGCGGTTATTACCCTGATAATCAC 110407 29 100.0 32 ............................. ATTGCCGCACTAGTCACCAATAAAGAACCTAT 110346 29 96.6 32 ............................G CCGACACCGACGGCTGCAATCTGCGCGATATA 110285 29 100.0 32 ............................. ACTTGGGTTTCCGAGTATGGCGACTGGGCATC 110224 29 96.6 34 ............................T AAATAACCTTCGGCTCCCCGGCAGACACATCGCG 110161 29 96.6 32 ............................A TACGGGTGTGGGGGGCATGTATATAGTAGGGG 110100 29 96.6 32 ............................T GTGGCTGGGTTGGTACTGCTGGGCGGCGCGAG 110039 29 96.6 33 ............................G TTTTTTATCAGTAGCAAAAGCGGCGATCTGTGG 109977 29 96.6 32 ............................G CCGCGGATGACCCGACGCGAGGATGCGTCCGC 109916 29 96.6 32 ............................G ATATGGAGTGTCGGCCACTTCGCCGGGGAATT 109855 29 96.6 33 ............................T TAAACGGGCCGTTAGAGGTGAATGGGGCGACCG 109793 29 96.6 32 ............................T ACGTAGACGGCTGGCGCGACTCATATGTCATA 109732 29 100.0 32 ............................. ATGCTGTACTGTCGTAAGGCTTTTCAGGGCCC 109671 29 100.0 33 ............................. GACTCGAACATTCCATAACGTGTCCGAGTCTTA 109609 29 100.0 32 ............................. ATGCTGCCGCGCCTCATCGAGATGGGCATACA 109548 29 100.0 32 ............................. GCGACGCAAAGAGGTCCCGGCTATATTAAAAG 109487 29 96.6 32 ............................G CGGCCCTATCGTTGATGACTGGCGTCCTGCAA 109426 29 96.6 32 ............................A GAAAATGTCGCCCCGCCGACCTTCAAAAGCGC 109365 29 100.0 32 ............................. GCGCACACTCCCACACGAGTATTGTGAGATCA 109304 29 96.6 33 ............................G TGTTTGCCGCATCGAAGGGGTGGCCGTTCTTGC 109242 29 100.0 32 ............................. CCTATCCGCCACCTTATTCTCGGCATCAGAAT 109181 29 100.0 32 ............................. ATGTCGTCCTCTTCCTGTAAAAATGTTGTGCC 109120 29 96.6 32 ............................T ACGGCGACGCTTCTTCGCAGGCCGCTGCTGCT 109059 29 96.6 32 ............................T CGCCACCACATCAGTATTTTGATCGAAAATCT 108998 29 100.0 33 ............................. TTTTGAGCTAAAATTTAATGACAGTTTTTTTGA 108936 29 100.0 32 ............................. GCTTCGAGACGGACGGTATCGTCCCGCGCCGA 108875 29 93.1 32 .....................G......T CATCCAGCTGTGTATCTGTCCACTGTCTCCAC 108814 29 96.6 32 ............................T AGACACCCTAGTCTTAGATAAACACGTCGACC 108753 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108692 29 96.6 32 ............................A CATTGTGAATAGCGGACCGAATAACGGCAGGG 108631 29 96.6 32 ............................T ATTATCTTCCGGTTCAACAATAGCAAAACTTA 108570 29 100.0 32 ............................. TCGTACTCTGGCATCAGAAGGGAATCTCACTC 108509 29 96.6 32 ............................G TCCATCCCGCGGTGCGGATTGGGGCGGCCTTC 108448 29 96.6 32 ............................T GTGACGCGTGCTGTACCGGAAACGATTTCGGG 108387 29 96.6 32 ............................G CCCAGATGCCTACAGATATTGGGGCTGCATAC 108326 29 96.6 32 ............................T TTTTCGGTTCAGGATTTGTGGGAGAAGATGGG 108265 29 100.0 32 ............................. TTCAGCGGCAATCTCCGCGATATCGGTCTGGA 108204 29 96.6 33 ............................A CGAAGTGACGATAGACAGGATGGCCGCCGTGGT 108142 29 96.6 32 ............................T AACAGCAGCCCATATCAACCTAAGCGGCCCCA 108081 29 96.6 32 ............................G TAACCTGGCCTCCGCCCACGGAGGCACTCCTC 108020 29 96.6 32 ............................G TATTCTCGCCTGAACTCTTATGTTATCCAGTC 107959 29 96.6 32 ............................G TATCTCCGGAGATCACATCGCGTGCAGCCTCC 107898 29 96.6 32 ............................T GGGCCATCGCCGCTAAATATCGGCGACATTGT 107837 29 96.6 32 ............................G TATCCTCCGCGAATTTCTTACGCGCAGCCCTA 107776 29 96.6 32 ............................T CGGCGCTTGCCGCTCGGCTCAGCGACGTTACC 107715 29 96.6 33 ............................T CTGTTGACGTGCGGGAGTCGCGGATAGGTTTTA 107653 29 96.6 32 ............................T ATTAGGCCCCAAGTCGCCCGAAGACTCCGAGG 107592 29 96.6 32 ............................T TTTTTGGGGTATGACGCGGCCATTAGTAGCCT 107531 29 100.0 32 ............................. TTCAGCGGCAATCTGCGCGATATCGGTCTGGA 107470 29 96.6 33 ............................G CATCCTCCGACATTCCGGGTGCACCATTAATTA 107408 29 100.0 32 ............................. ACCGCCAACAACAAGCGGGACAACAGTACGAA 107347 29 96.6 32 ............................A ACGTACACCCGCGCGCCACCAAAGCCGTTCCA 107286 29 96.6 32 ............................G CGTTCGATGCCGTATTTGCGTGGGTCGTGTGC 107225 29 96.6 32 ............................T TGTCTCCCGTTAAGGACGTGGTTCCCGTGAAT 107164 29 100.0 32 ............................. GCAATTGATGCGCGAGTAGCCGCGATGGAGAC 107103 29 96.6 32 ............................G TACCAAATCGATGTAAAAACGACCTCGGGAAG 107042 29 96.6 32 ............................T GGTTTCCGCGCCCGACAGCCCTACGTTGATGT 106981 29 96.6 32 ............................G TCTATCTAAAGCGTCTTTTCTTATGTTCAATA 106920 29 96.6 33 ............................G CATTCTGCATATCCACATTAGCCTGATCACTTA 106858 29 96.6 33 ............................G ATCAGCCCGCACCCTATCCGCGACCTTATTCTC 106796 29 96.6 33 ............................G GAGCTTCTCCTACCCGGGGTCGCGGAAGCCCTC 106734 29 100.0 32 ............................. CGTCGGCCATGGTACCCCTGACTCGTCGGCAT 106673 29 96.6 32 ............................T GCGATTAATGCGCAATCCAGGAAAACCCATTG 106612 29 96.6 33 ............................A GTGATTCGCAAATCCGGGCGACCAATAAAATAC 106550 29 100.0 33 ............................. GTCACCCTCTGCGGCATAAAGCGCTTCACCCCA 106488 29 100.0 32 ............................. AGGGCGAGCGGTATTTATGCCTTAGCTTCTGT 106427 29 96.6 33 ............................T TGTCAGTCATATTGACTCCATTTTCTTTTCTGG 106365 29 93.1 32 ..........................T.A ACAAACTCAATACCTTCGCGTTTAGCCGCGTT 106304 29 96.6 33 ............................G CGTTATCCCGTCCATGCCGGGCTTTCGCACTAA 106242 29 100.0 32 ............................. ATCGCCGGAAACGTGGCCCTCGCCGGAAAGAT 106181 29 96.6 33 ............................T AGGACATATGATCCGCCCAGGTACCAGTAATGC 106119 29 96.6 32 ............................T GAGGATGCCTCTGGCCTTGTATGACAGCCTGC 106058 29 96.6 33 ............................T ACGGAGACAACGCCATCTAGATCAGTCATGAGA 105996 29 96.6 32 ............................A GTGACTGAAGTTGTACCCAAAATCGTGGACAG 105935 29 96.6 32 ............................G AATCGGCAGTTTAGCATACTGAGTTGTACCGC 105874 29 96.6 34 ............................T TCCCGCTTCGATAAGTTGGGGAAGTAGTGTGACG 105811 29 96.6 32 ............................G GCTCTTCTTTCGATTCTTAACCGTTAGTGTGT 105750 29 96.6 32 ............................T TCACTGCTGCCCCTGTAGCCAAAAAGGCCAGG 105689 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ==================================== ================== 145 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : ACGCCGCCGGATATCTCGCACTAGTTCACGCGCACGGTAAGCGCTTGTGAGTTGCCCTCCCCACGCCCTCTGATTTCAGCGGCATATCACTGCTGCTCATACGTAACCGACTGTCACTCATGACCATCCAGCCCAGCGTCAGTCAAGGGAGAACTCGGGTCGTCCCCTCGGCGGGCACAAATACATCGGTAGGTCGATGCTCCGCCTCACTCAACCAACCACAGCAGACGCGGAGAAAGGAGCCTTCATGACCTACTCAACCCAGACAAAGCTCGGATACATTGCGGCCAGCATCGTCCTCGGAATCCCCATCGCCTTCCTCGCCGTTTTAGTGACAAGCAACATTGCACTGGTTTACCACTGGCCCTCCCCGCTCTGGATCGGTGCTCACGCAGCCGCTTGTACTGCCGTTGCGGGAGGGGTGTACTGTCTGCACAAAGCTGCCACGTCGGTTGCTGCACGCCGACAGTCCGAGAAGTTACCCTGGGCGACCTACACAG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //