Array 1 340202-338565 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITF01000007.1 Azospirillum brasilense strain BR 11796 Ga0314195_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 340201 32 100.0 34 ................................ ATGACTGCCTCACTGGATGTACGGGAGGAGGATG 340135 32 100.0 35 ................................ GCCTCATCTTCAAGGCCGCCGTCGCATACCGTTAG 340068 32 100.0 35 ................................ TGGCGGAACGGGCGGGAATGCCGCTGGTGCCGCAT 340001 32 100.0 35 ................................ TCGAAATCTACGAACCGGCGGTGCTCCAGCGGATC 339934 32 100.0 33 ................................ TCGGACACGTCCCAATCGCCTTCAAGCAACTGG 339869 32 100.0 34 ................................ CAGGGCGTCCCGTCACAGGCTGCGGAGTGACGGC 339803 32 100.0 34 ................................ GCCCCCGGCCTTGGCGAAGAAGTGCGCGAACAGG 339737 32 100.0 35 ................................ CCGGAGTTCGGTCGGCGGCAGGCGGAAGAGCTTTG 339670 32 100.0 37 ................................ AGCTTCTCGGCCGCATCCCGCGTCATCAGGAAGGACT 339601 32 100.0 35 ................................ GATGTCGATCTACTCGGCGACGATGGGCTCCGACC 339534 32 100.0 35 ................................ CCTCTCGGATATCCCGCAGCGAGACGCCGCGCTCT 339467 32 100.0 36 ................................ CCGCCGTCCTTCAGCACCTCATCCACAGCACGCCAG 339399 32 100.0 36 ................................ AGCGCGGTAAGTGATCCGCCGCCGCTAAATTCGTAT 339331 32 100.0 33 ................................ CTTGGCTTCCTTGAGGCGTACCACCTCCCGCTT 339266 32 100.0 33 ................................ AACAAGCCTGTGACACCGACCGACGCCGCGCGA 339201 32 100.0 35 ................................ TTTGGCGCCCATGCGCCGATCCAAGCCAAAGGCTT 339134 32 100.0 35 ................................ GTCGGCTTCGGACAGCGGAGATGAAGGCCAAGCCC 339067 32 100.0 37 ................................ GAGCGCACCTCCCACACACCCATAAGCTCATGGGAGC 338998 32 100.0 36 ................................ AGAACGAAGAACAGCGCGGTGTTGGCAAGCCCGACG 338930 32 100.0 36 ................................ GTCAATCAGGCGATCAACGAGGGCACCAGGGTCCTT 338862 32 100.0 35 ................................ AGAACCGCCCGGTTGAAGGACGTTCGTTGGGCATC 338795 32 100.0 35 ................................ ACGCAATTCCTGGCAGAAACCCTCAACCTGGGAAT 338728 32 100.0 34 ................................ CCGGCCGTGGCCGTCTTGGCGGCGATCATGGCGC 338662 32 100.0 34 ................................ GCGTGTCGGAGATGCCGCCAACCGCTCAGATCGT 338596 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ===================================== ================== 25 32 99.9 35 GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Left flank : CTGGATGGGTATCCGCCTTTCCTATGGAAGTGAATTCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCACCCGGACGCCGCCGGCTGCGCCGGGTCGCCAGAGCCTGCCAGGATTTTGGACAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGATCCGGCACAATGGACCGCTCTGCGCGCCCGGCTGATCGGAGAAATCAACCAGGAGACGGACAGCCTGCGCTTCTACCACCTTGGGGCCAACGCGGCCCGCCGCATCGAGCATGTGGGAGCCAAGCCTGTTCTGGACCTCGGTGGCGCATTGGTTTTCTGATCGGCGCGAACCGGAAGCGGGCACGAAAACCCCAGGGGGTTCGCACATCATTCTCATCAATGCCTTGTGCGGTTCTGACACGACGATGGCCGCTTCTCCGGCCGCTTCCGGTGGAGGTTCGCACCAATCGAGGGATTGTGGGTTGTTGGACAAGTGCATACAGATGAGGG # Right flank : CTCGTCCTTCCGGCTTCTGACATGCACCAAGCTGCGGCAGTTGGCCGCTTCGCTGGCCGTCGAGCGATCGGCGCTGTCCGCCCATAACCGGCCGTCGAAGGCATTCAGACCGAGCACGCACTGATCTCGACACCGTCGTGCCGCTCCAGTGACGATGACGCGCCGGATCGGCCGGACCCCTATGGGCCGGAAATCCGGCGCCCCATGCGACCTCTCCACCTTTTTCCAGCATCTCCAAAAAAGTCCGCCAGCTTTTCCGATCCCCTCCGTGGATAGCCACAGAACGGGACAACGCTCCGCCCTGCGGCGCCACTTCCCGGACCACACGCTGGATCATCACGCCGAAACGGACGCGGAATCCCCGATTCCCGCGACGGGGAGGCTGCATCCCGGAGGCCGCCATGCAGGTTGACTCGCTCAGCTCCTCGACCGTCACGACCACCTCGTCCGCCAAAAGCTCCTCGGCCTCGCTGGCCGGCAGCTACCAGTCCTTCCTGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCATGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 348770-351411 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITF01000007.1 Azospirillum brasilense strain BR 11796 Ga0314195_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 348770 32 100.0 34 ................................ TGCGAACATCAGGGCGTAATCGCCGCGCTGATCC 348836 32 100.0 33 ................................ CAGCATCCCGACATAGGCATCAAGCTTCTGCGC 348901 32 100.0 34 ................................ ACCCACTGGATGCCGCTTCCCGCTCCGCCCGCCA 348967 32 100.0 35 ................................ TCGCTTTTGCCGGCGTCGGTGATGATCCTGATGCC 349034 32 100.0 36 ................................ CATTACTGACAACCACGTGGACCGATCCCGCGTAGG 349102 32 100.0 35 ................................ GATGACGGCGTTGTCAGAGGCTTTGGCGAGGCGGG 349169 32 100.0 35 ................................ CCTTCCTCGACTTCCGCAAGGAGAGCCTGGAAAGC 349236 32 100.0 37 ................................ GGCAGCCATGGCATCGGCGCCGGGGTGGGTGTCGGAG 349305 32 100.0 35 ................................ ATCGGCCGGAGGGGCTTCTGGCTGCCCCGGCGCTT 349372 32 100.0 34 ................................ TCGACGCCATGGATCGACCTCACACGCCGCAACC 349438 32 100.0 36 ................................ ATCCTGAACGACGCCGGTTGCGCCGCCGCTGCGGCC 349506 32 100.0 35 ................................ GCCTTGATCGTAGCGGTGGTTGTCCTGCCGATGAT 349573 32 100.0 34 ................................ CTTTCATCGATCCACGCGGCCAGATGCTCGATTG 349639 32 100.0 36 ................................ AACGGCCCGACCATGGGGCAGGAGTGGGACGCTCCG 349707 32 100.0 35 ................................ ACTGATCATCAGGGCCAATATCGACGCAACGGAGA 349774 32 100.0 35 ................................ CCATTTGAAATCGGGCGTTCCGACCTTTTGAAGTT 349841 32 100.0 34 ................................ GGCGCCAACAAGGCGGTGTCGGCAGGCATCGGCG 349907 32 100.0 34 ................................ CAGAGCGGCAAGCGGCTCAAACTCTCCGCCGGGG 349973 32 100.0 35 ................................ TGGGAAGCCGCGCCCGTCCTCCAGCAGGGCGGCGG 350040 32 100.0 34 ................................ CGCTTCGGTGTGCCGCGTCGGGCCAACGGCCCCG 350106 32 100.0 35 ................................ CCCTGTATGGTGGCACCGCTCAGCACCTCAGCCAC 350173 32 100.0 35 ................................ TGGTGGTGATCGGCATCGGAATAGCGTCCAGCCCG 350240 32 100.0 34 ................................ GGCGGCAGTGGTCGGCCATGTGGAGGCGTGAGCC 350306 32 100.0 36 ................................ GCCGCCACCAGCTTGCGGATCAGGTTGTCACCGCCC 350374 32 100.0 34 ................................ ACGTCCTCGTCCAGGGCGTCGGCGACGATGGTCT 350440 32 100.0 37 ................................ GCGCCGTAGAGCACCTTGAAAATGGCGGTGATGCCCC 350509 32 100.0 35 ................................ CCGTTCCCACCATCGTGGTGGCGACCGGGACCGGC 350576 32 100.0 35 ................................ AGAACGGCGTGCTGGCGGGGCTCGTAGGTCTGGCC 350643 32 100.0 34 ................................ GCCTGCATCAACGCCGCCTGGGAGAGCCTGCCCG 350709 32 100.0 34 ................................ GACCTGAAGGACTGCGCCCTGTGAGCCGCATCCG 350775 32 96.9 35 ...............G................ CCGAGCGGCGGCGGCTTCACGCTGACCTTCCCGGT 350842 32 96.9 35 ...............G................ CTTCCGTCAGGCGGCCACATGCTTCCTGGCAGATC 350909 32 96.9 34 ...............G................ GACGCCCAAACGTAGGGGCGGCCAGACTGCCATT 350975 32 96.9 35 ...............G................ CAGGGCGGCGTAGCGGCGGCCGAGCGCGCGGGCGA 351042 32 96.9 34 ...............G................ GGCAGCCATCGCGTCGGCGCCGGGGTGGGTGTCG 351108 32 96.9 36 ...............G................ CGCCGCGGGACGAGTGCGGCGGACAACGGCGGCGAC 351176 32 93.8 33 ...............G.A.............. TGATCCATGACCGTCACACTCACCGATCAGTAC 351241 32 96.9 40 ...............G................ AGCCCTCCTGTGAGGTGGGGAAGCGACCGAGCAGGCCCTT 351313 32 96.9 35 ...............G................ GCCGCCGGATGGGAGATCAGCCGTCGCGATCCCGA 351380 32 90.6 0 ...............G............C.G. | ========== ====== ====== ====== ================================ ======================================== ================== 40 32 99.0 35 GTCGCCCTCCCTGCGAGGGCGTGGATTGAAAC # Left flank : ACCATGAGGAATTTTTCCAGAGGGATTTTTCCCCTGAAGGCGCGGGTTTCGCCAGAGGTTGGTTGGTGAACCGTCCTGCGCTGCGGTCGGTCTTCAGGATGCGCCCGGTGACGCGACTGTTCCTGATTGCGTTTTCGGGGGCTGTGACTGGATACCGGAGGACGGCGAAGATCAGCCGACTCTTCAGTATTGCCGAACCGGTTGCGCCGGCGTCATCTGCCGTCGCTGACCTTCGAGGATGGGGGACCCTGATCGGCACGGCCGCGATACGCCGCCTTGAACATGGATGCCAAACCGGGGCTGGATTTTGGCGCCGCGTTGGTCTTTTAATCGGTGCGAACCGGTAGCAGGCATGAAAACCCCGGGGGGTTCGCACATCATTCTCATCAATGACTTGTGCGATTGCGAGACGAAAGTGGCCGTGTCTCGGCGCTCCCCTGACGGAGGTTCGCGCCGGTCTGGGTGTTTTGGGTTGTTGGACAAGTGCATACTGATGAGGA # Right flank : CCTCTTGGACGGCCGCAACCCCGATTGAAGACAGGTGGAACGCCGCTTATGCGCGACGCGACGGGGCCGGGATGGTGCTTTCGGTCGTCCGCTGTGGAAACGGGCTCTCCGTAGTGCCGGAGTCGGCGTGGTCGATGATCGGGCCCGCCGGCGGGACCGTCACCCCGAAGGCGTGCCTTCGTTGGGTTGGGACCGCCGCGGCATTGCGGCGGTCGCGGTCACGCCAATCGCGCGAGCAACGCATCCAGCATGCGGTCGCAGGCGGCCAACTGGTCCTCCGCGACGAACTCGTCGGGCTTGTGGGCCTCGCCGATGCTGCCGGGGCCGCAGACGACGGTGGGGATGGACAGGCGCCGCTGGAACAGTCCGCCCTCGGTGCCGAAGGAAATCTTGCCCAGGCTGTTGCCGCCGGTGAGCGCCTTGACGAAGGACACCACCTCCGCATCCTCGTCGGTGTCGAGGGCGGGGTAGCTGGACAGCTCCGTGATGTCCACGGCGGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCCTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //